Variant report

Variant	rs6881815
Chromosome Location	chr5:93105666-93105667
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 209 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:207)

rs_ID	r²[population]
rs10036829	0.91[ASN][1000 genomes]
rs10038424	0.91[ASN][1000 genomes]
rs10038828	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10038831	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10041792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10044641	0.87[EUR][1000 genomes]
rs10045836	0.91[ASN][1000 genomes]
rs10050364	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10050465	0.88[ASN][1000 genomes]
rs10051878	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10052662	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs10053405	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10054790	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs10054903	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs10055340	0.91[ASN][1000 genomes]
rs10055741	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10056879	1.00[JPT][hapmap]
rs10057118	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10057130	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10057664	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10058331	1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs10060160	0.83[ASN][1000 genomes]
rs10060331	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10061069	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs10061377	0.91[ASN][1000 genomes]
rs10062711	0.88[ASN][1000 genomes]
rs10064158	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10064368	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10065056	0.83[ASN][1000 genomes]
rs10066431	0.91[ASN][1000 genomes]
rs10066791	0.88[ASN][1000 genomes]
rs10067259	0.83[ASN][1000 genomes]
rs10067541	0.87[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10067754	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10070350	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10071040	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.92[MKK][hapmap];0.89[TSI][hapmap];0.91[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10071805	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10075217	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10076052	0.91[ASN][1000 genomes]
rs10076192	0.88[ASN][1000 genomes]
rs10076965	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10078194	0.85[ASN][1000 genomes]
rs10078941	1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs10079708	1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs10214278	0.86[JPT][hapmap]
rs1026279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1031424	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1038686	0.83[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.86[TSI][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1046217	0.86[JPT][hapmap]
rs10476520	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10476522	0.91[ASN][1000 genomes]
rs10476588	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10476590	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs10476597	0.85[ASN][1000 genomes]
rs10476598	0.85[ASN][1000 genomes]
rs10476599	0.83[ASN][1000 genomes]
rs10514376	0.87[CHD][hapmap];0.86[JPT][hapmap]
rs11135394	0.89[CEU][hapmap];0.87[TSI][hapmap]
rs11135397	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11948511	0.83[CEU][hapmap]
rs12054831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12109629	0.85[ASN][1000 genomes]
rs12153021	0.85[ASN][1000 genomes]
rs12153501	0.85[ASN][1000 genomes]
rs12153506	0.85[ASN][1000 genomes]
rs12188163	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12332731	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12653528	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12716453	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12716454	0.86[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs13153245	0.85[ASN][1000 genomes]
rs13153987	0.91[ASN][1000 genomes]
rs13154000	0.91[ASN][1000 genomes]
rs13154650	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs13155452	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs13156202	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs13161885	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs13164315	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs13165221	0.84[EUR][1000 genomes]
rs13165400	0.91[ASN][1000 genomes]
rs13167027	0.89[CEU][hapmap];0.87[TSI][hapmap];0.88[EUR][1000 genomes]
rs13169675	0.85[ASN][1000 genomes]
rs13170509	0.83[ASN][1000 genomes]
rs13171131	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs13173952	0.88[ASN][1000 genomes]
rs13177800	0.91[ASN][1000 genomes]
rs13178857	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13181456	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13182631	0.91[ASN][1000 genomes]
rs13184801	0.84[EUR][1000 genomes]
rs13185660	0.88[ASN][1000 genomes]
rs13357713	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs13361613	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs1349711	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1372037	0.87[YRI][hapmap]
rs1453003	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.84[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1470150	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs167570	0.91[ASN][1000 genomes]
rs17083278	0.87[CHD][hapmap];0.86[JPT][hapmap]
rs17083297	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17083337	0.83[YRI][hapmap]
rs17083377	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17083380	0.89[CEU][hapmap];0.87[TSI][hapmap]
rs17312456	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17314762	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17314797	1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs17314825	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs17372057	1.00[CHB][hapmap];0.87[CHD][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs17372615	0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17372649	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17372725	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17374166	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17374627	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs1844343	0.87[CHD][hapmap];0.86[JPT][hapmap]
rs1901736	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1982439	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2043979	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs2045019	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2045020	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2045021	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2084916	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2119449	0.83[YRI][hapmap]
rs2290937	0.85[ASN][1000 genomes]
rs2344918	0.83[YRI][hapmap]
rs28412976	0.88[ASN][1000 genomes]
rs28418572	0.85[ASN][1000 genomes]
rs28526002	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28534784	0.91[ASN][1000 genomes]
rs28575883	0.85[ASN][1000 genomes]
rs28594545	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28610997	0.88[ASN][1000 genomes]
rs2924374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34138834	0.83[ASN][1000 genomes]
rs34454564	0.82[ASN][1000 genomes]
rs34592268	0.88[ASN][1000 genomes]
rs34595581	0.85[ASN][1000 genomes]
rs34621188	0.91[ASN][1000 genomes]
rs34891708	0.91[ASN][1000 genomes]
rs34967135	0.91[ASN][1000 genomes]
rs35075119	0.83[ASN][1000 genomes]
rs35107028	0.91[ASN][1000 genomes]
rs35372313	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35426871	0.85[ASN][1000 genomes]
rs35496867	0.91[ASN][1000 genomes]
rs35747258	0.91[ASN][1000 genomes]
rs35791029	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35878747	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36042718	0.91[ASN][1000 genomes]
rs3776601	0.86[JPT][hapmap]
rs55724660	0.91[ASN][1000 genomes]
rs55947981	0.91[ASN][1000 genomes]
rs56108532	0.91[ASN][1000 genomes]
rs6556829	0.86[JPT][hapmap]
rs6556833	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs6556834	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6556838	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs6556839	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66564678	0.91[ASN][1000 genomes]
rs67150649	0.83[ASN][1000 genomes]
rs67328989	0.88[ASN][1000 genomes]
rs68122392	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6859757	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6865441	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs6868067	0.89[ASN][1000 genomes]
rs6874766	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6877030	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6877616	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.85[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];0.91[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6879620	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6884138	0.87[CHD][hapmap];0.86[JPT][hapmap]
rs6885725	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6886025	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6890998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6892055	0.97[ASN][1000 genomes]
rs6895356	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6898507	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6898842	0.91[ASN][1000 genomes]
rs72786644	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72786647	0.91[ASN][1000 genomes]
rs72786702	0.88[ASN][1000 genomes]
rs7701011	0.91[ASN][1000 genomes]
rs7701114	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7701314	0.88[ASN][1000 genomes]
rs7701974	0.91[ASN][1000 genomes]
rs7702348	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7702649	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7712388	0.86[JPT][hapmap]
rs7713956	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];0.84[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7715562	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7717718	0.83[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7721168	0.87[CHD][hapmap];0.86[JPT][hapmap]
rs7721668	0.83[CEU][hapmap]
rs7723944	0.83[YRI][hapmap]
rs7729237	0.83[YRI][hapmap]
rs7729807	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7730993	0.87[YRI][hapmap]
rs7734897	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7735009	0.83[CEU][hapmap]
rs7736620	0.91[ASN][1000 genomes]
rs7736624	0.87[CHD][hapmap];0.86[JPT][hapmap]
rs7736892	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs890738	0.89[EUR][1000 genomes]
rs896729	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9314086	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9314087	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9314092	0.85[ASN][1000 genomes]
rs9314093	0.88[ASN][1000 genomes]
rs9885329	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv830405	chr5:93086825-93258518	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93070000-93108200	Weak transcription	Thymus	Thymus
2	chr5:93070400-93108200	Weak transcription	Liver	Liver
3	chr5:93075400-93108400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr5:93075800-93108200	Weak transcription	Primary B cells from cord blood	blood
5	chr5:93076800-93108200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr5:93077000-93108400	Weak transcription	Ovary	ovary
7	chr5:93077200-93130400	Weak transcription	Spleen	Spleen
8	chr5:93077400-93111000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr5:93082800-93108400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:93087600-93108400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr5:93087800-93124000	Weak transcription	Pancreas	Pancrea
12	chr5:93092400-93112000	Weak transcription	Psoas Muscle	Psoas
13	chr5:93094800-93111000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr5:93096000-93108200	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr5:93096400-93113600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr5:93099000-93108200	Weak transcription	Primary B cells from peripheral blood	blood
17	chr5:93100400-93108400	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr5:93100600-93136200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr5:93101200-93108400	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr5:93101200-93164200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr5:93101400-93108200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr5:93101400-93112000	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr5:93101800-93136600	Weak transcription	HSMMtube	muscle
24	chr5:93102000-93109600	Weak transcription	Fetal Intestine Large	intestine
25	chr5:93102600-93113200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr5:93102800-93108400	Weak transcription	Lung	lung
27	chr5:93103200-93108400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr5:93103400-93108400	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr5:93103600-93108200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr5:93103600-93108400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr5:93103600-93108400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr5:93103800-93113200	Weak transcription	Brain Germinal Matrix	brain
33	chr5:93104600-93108200	Weak transcription	Primary T cells from cord blood	blood
34	chr5:93104600-93108200	Weak transcription	Left Ventricle	heart
35	chr5:93104600-93108400	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr5:93104600-93108400	Weak transcription	Fetal Intestine Small	intestine
37	chr5:93104600-93109400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr5:93105600-93108200	Weak transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links