Variant report

Variant	rs9314087
Chromosome Location	chr5:93107933-93107934
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10041792	0.81[EUR][1000 genomes]
rs10050364	0.83[EUR][1000 genomes]
rs10057118	0.81[AMR][1000 genomes]
rs10064158	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10067754	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10070350	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10071040	0.81[EUR][1000 genomes]
rs10076965	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10476520	0.83[EUR][1000 genomes]
rs13181456	0.81[EUR][1000 genomes]
rs28526002	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28594545	0.83[EUR][1000 genomes]
rs35372313	0.81[EUR][1000 genomes]
rs35791029	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35878747	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs68122392	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6877616	0.81[EUR][1000 genomes]
rs6881815	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6886025	0.82[AMR][1000 genomes]
rs6890998	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6895356	0.80[AMR][1000 genomes]
rs6898507	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72786644	0.83[AMR][1000 genomes]
rs7701114	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7702348	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7702649	0.83[EUR][1000 genomes]
rs7729807	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv830405	chr5:93086825-93258518	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93070000-93108200	Weak transcription	Thymus	Thymus
2	chr5:93070400-93108200	Weak transcription	Liver	Liver
3	chr5:93075400-93108400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr5:93075800-93108200	Weak transcription	Primary B cells from cord blood	blood
5	chr5:93076800-93108200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr5:93077000-93108400	Weak transcription	Ovary	ovary
7	chr5:93077200-93130400	Weak transcription	Spleen	Spleen
8	chr5:93077400-93111000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr5:93082800-93108400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:93087600-93108400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr5:93087800-93124000	Weak transcription	Pancreas	Pancrea
12	chr5:93092400-93112000	Weak transcription	Psoas Muscle	Psoas
13	chr5:93094800-93111000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr5:93096000-93108200	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr5:93096400-93113600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr5:93099000-93108200	Weak transcription	Primary B cells from peripheral blood	blood
17	chr5:93100400-93108400	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr5:93100600-93136200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr5:93101200-93108400	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr5:93101200-93164200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr5:93101400-93108200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr5:93101400-93112000	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr5:93101800-93136600	Weak transcription	HSMMtube	muscle
24	chr5:93102000-93109600	Weak transcription	Fetal Intestine Large	intestine
25	chr5:93102600-93113200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr5:93102800-93108400	Weak transcription	Lung	lung
27	chr5:93103200-93108400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr5:93103400-93108400	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr5:93103600-93108200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr5:93103600-93108400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr5:93103600-93108400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr5:93103800-93113200	Weak transcription	Brain Germinal Matrix	brain
33	chr5:93104600-93108200	Weak transcription	Primary T cells from cord blood	blood
34	chr5:93104600-93108200	Weak transcription	Left Ventricle	heart
35	chr5:93104600-93108400	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr5:93104600-93108400	Weak transcription	Fetal Intestine Small	intestine
37	chr5:93104600-93109400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr5:93105600-93108200	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr5:93106200-93108400	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr5:93106600-93108200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr5:93106600-93108400	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr5:93106600-93108400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr5:93106600-93108400	Weak transcription	Brain Hippocampus Middle	brain
44	chr5:93106600-93108400	Weak transcription	Fetal Muscle Trunk	muscle
45	chr5:93106600-93109000	Weak transcription	Brain Substantia Nigra	brain
46	chr5:93106600-93114200	Weak transcription	Fetal Brain Female	brain
47	chr5:93106800-93108200	Weak transcription	Dnd41	blood
48	chr5:93106800-93108400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr5:93106800-93108400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr5:93106800-93108400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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