Variant report

Variant	rs10476520
Chromosome Location	chr5:93058290-93058291
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 176 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:175)

rs_ID	r²[population]
rs10036829	0.85[ASN][1000 genomes]
rs10038424	0.85[ASN][1000 genomes]
rs10038828	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10038831	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10041792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10044641	0.87[EUR][1000 genomes]
rs10045836	0.85[ASN][1000 genomes]
rs10050364	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10051878	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10052662	0.83[ASN][1000 genomes]
rs10053405	0.85[ASN][1000 genomes]
rs10054790	0.83[ASN][1000 genomes]
rs10054903	0.85[ASN][1000 genomes]
rs10055340	0.85[ASN][1000 genomes]
rs10055741	0.80[ASN][1000 genomes]
rs10057118	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10057130	0.85[ASN][1000 genomes]
rs10057664	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10058331	0.83[ASN][1000 genomes]
rs10060331	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10061069	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs10061377	0.85[ASN][1000 genomes]
rs10064158	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10066431	0.85[ASN][1000 genomes]
rs10067541	0.88[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10067754	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10070350	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10071040	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10071805	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10075217	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10076052	0.85[ASN][1000 genomes]
rs10076965	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10078941	0.83[ASN][1000 genomes]
rs10079708	0.83[ASN][1000 genomes]
rs10214278	0.86[JPT][hapmap]
rs1026279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1031424	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1038686	0.83[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1046217	0.88[JPT][hapmap]
rs10476522	0.85[ASN][1000 genomes]
rs10476588	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10476590	1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs10514376	0.86[JPT][hapmap]
rs11135394	0.89[CEU][hapmap]
rs11135397	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12054831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12153021	0.91[ASN][1000 genomes]
rs12188163	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12332731	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12653528	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12716453	0.83[ASN][1000 genomes]
rs12716454	0.83[ASN][1000 genomes]
rs13153987	0.85[ASN][1000 genomes]
rs13154000	0.97[ASN][1000 genomes]
rs13154650	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs13155452	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs13156202	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs13161885	1.00[JPT][hapmap]
rs13164315	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs13165221	0.85[EUR][1000 genomes]
rs13165400	0.97[ASN][1000 genomes]
rs13167027	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs13171131	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs13173952	0.83[ASN][1000 genomes]
rs13177800	0.85[ASN][1000 genomes]
rs13178857	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13181456	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13182631	0.85[ASN][1000 genomes]
rs13184801	0.85[EUR][1000 genomes]
rs13185660	0.82[ASN][1000 genomes]
rs13357713	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs13361613	0.83[ASN][1000 genomes]
rs1349711	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1372037	0.84[YRI][hapmap]
rs1453003	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1470150	1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs167570	0.97[ASN][1000 genomes]
rs17083278	0.86[JPT][hapmap]
rs17083297	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17083337	0.83[YRI][hapmap]
rs17083377	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17083380	0.89[CEU][hapmap]
rs17312456	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17314762	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17314797	1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs17314825	1.00[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs17372057	1.00[CHB][hapmap];0.86[JPT][hapmap];0.97[ASN][1000 genomes]
rs17372615	0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17372649	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17372725	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17374166	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1844343	0.86[JPT][hapmap]
rs1901736	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1965712	0.85[ASN][1000 genomes]
rs1965713	0.85[ASN][1000 genomes]
rs1982439	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2043979	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs2045019	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2045020	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2045021	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2084916	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2119449	0.83[YRI][hapmap]
rs2344918	0.83[YRI][hapmap]
rs28412976	0.83[ASN][1000 genomes]
rs28526002	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28534784	0.97[ASN][1000 genomes]
rs28594545	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28610997	0.83[ASN][1000 genomes]
rs2924374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34592268	0.83[ASN][1000 genomes]
rs34621188	0.85[ASN][1000 genomes]
rs34891708	0.85[ASN][1000 genomes]
rs34967135	0.85[ASN][1000 genomes]
rs35107028	0.97[ASN][1000 genomes]
rs35372313	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35496867	0.85[ASN][1000 genomes]
rs35747258	0.85[ASN][1000 genomes]
rs35791029	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35878747	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36042718	0.85[ASN][1000 genomes]
rs3776601	0.86[JPT][hapmap]
rs55724660	0.85[ASN][1000 genomes]
rs55947981	0.85[ASN][1000 genomes]
rs56108532	0.85[ASN][1000 genomes]
rs6556829	0.86[JPT][hapmap]
rs6556833	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs6556834	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6556838	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6556839	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs66564678	0.85[ASN][1000 genomes]
rs67328989	0.83[ASN][1000 genomes]
rs68122392	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6859757	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6868067	0.94[ASN][1000 genomes]
rs6874766	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6877030	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6877616	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6879620	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6881815	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6884138	0.86[JPT][hapmap]
rs6885725	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6886025	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6890998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6892055	0.91[ASN][1000 genomes]
rs6895356	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6898507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6898842	0.85[ASN][1000 genomes]
rs72786644	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72786647	0.97[ASN][1000 genomes]
rs72786702	0.83[ASN][1000 genomes]
rs7701011	0.85[ASN][1000 genomes]
rs7701114	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7701314	0.83[ASN][1000 genomes]
rs7701974	0.85[ASN][1000 genomes]
rs7702348	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7702649	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7712388	0.88[JPT][hapmap]
rs7713956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7715562	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7717718	0.83[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7721168	0.86[JPT][hapmap]
rs7721509	0.82[JPT][hapmap]
rs7723944	0.83[YRI][hapmap]
rs7729237	0.83[YRI][hapmap]
rs7729807	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7730993	0.87[YRI][hapmap]
rs7734897	0.85[ASN][1000 genomes]
rs7736620	0.85[ASN][1000 genomes]
rs7736624	0.86[JPT][hapmap]
rs7736892	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs890738	0.89[EUR][1000 genomes]
rs896729	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9314086	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9314087	0.83[EUR][1000 genomes]
rs9314093	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93038400-93076200	Weak transcription	Ovary	ovary
2	chr5:93040600-93088600	Weak transcription	Aorta	Aorta
3	chr5:93043000-93076400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr5:93045000-93073200	Weak transcription	Primary B cells from cord blood	blood
5	chr5:93053200-93058800	Weak transcription	A549	lung
6	chr5:93054400-93066200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr5:93055600-93059400	Enhancers	Fetal Intestine Small	intestine
8	chr5:93056800-93059200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:93056800-93059200	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr5:93056800-93059600	Enhancers	Fetal Kidney	kidney
11	chr5:93057000-93059000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:93057400-93080600	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr5:93057600-93070200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr5:93057800-93059200	Enhancers	Fetal Intestine Large	intestine
15	chr5:93057800-93059200	Enhancers	Fetal Lung	lung
16	chr5:93057800-93060600	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr5:93057800-93071000	Weak transcription	Primary T cells from cord blood	blood
18	chr5:93058000-93058600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr5:93058000-93058600	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr5:93058000-93060600	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr5:93058200-93059200	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr5:93058200-93060000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr5:93058200-93060200	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr5:93058200-93060200	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr5:93058200-93060800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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