Variant report

Variant	rs36042718
Chromosome Location	chr5:93180997-93180998
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:93180729..93182562-chr5:93182631..93185240,2	MCF-7	breast:

Extended variants
information (count: 174 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:171)

rs_ID	r²[population]
rs10036024	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10036829	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10036891	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10038424	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10038828	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10038831	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10041792	0.85[ASN][1000 genomes]
rs10045836	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10050364	0.85[ASN][1000 genomes]
rs10050465	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10051878	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10052662	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10053405	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10054790	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10054903	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10055340	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10055741	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10056879	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10057130	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10057664	0.97[ASN][1000 genomes]
rs10058331	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10060331	0.85[ASN][1000 genomes]
rs10061377	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10062711	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10064158	0.85[ASN][1000 genomes]
rs10064368	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10066431	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10066791	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10067259	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10067541	0.80[ASN][1000 genomes]
rs10067754	0.85[ASN][1000 genomes]
rs10070350	0.91[ASN][1000 genomes]
rs10071040	0.85[ASN][1000 genomes]
rs10071805	0.80[ASN][1000 genomes]
rs10075217	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10076052	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10076192	0.85[ASN][1000 genomes]
rs10076965	0.85[ASN][1000 genomes]
rs10078194	0.82[ASN][1000 genomes]
rs10078941	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10079708	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10214278	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1026279	0.97[ASN][1000 genomes]
rs1031424	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1038686	0.80[ASN][1000 genomes]
rs10476520	0.85[ASN][1000 genomes]
rs10476522	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10476588	0.97[ASN][1000 genomes]
rs10476590	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10476597	0.82[ASN][1000 genomes]
rs10476598	0.82[ASN][1000 genomes]
rs11135397	0.97[ASN][1000 genomes]
rs12054831	0.97[ASN][1000 genomes]
rs12109629	0.82[ASN][1000 genomes]
rs12153021	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12153501	0.82[ASN][1000 genomes]
rs12153506	0.82[ASN][1000 genomes]
rs12188163	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12332731	0.85[ASN][1000 genomes]
rs12653528	0.97[ASN][1000 genomes]
rs12716453	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12716454	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13153245	0.82[ASN][1000 genomes]
rs13153987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13154000	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13154650	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13155452	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13156202	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13161885	0.87[EUR][1000 genomes]
rs13164315	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13165400	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13169675	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13171131	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13173952	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13177800	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13178857	0.83[ASN][1000 genomes]
rs13182631	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13185660	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13357713	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13361613	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1349711	0.97[ASN][1000 genomes]
rs1453003	0.85[ASN][1000 genomes]
rs1470150	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs167570	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17083297	0.83[ASN][1000 genomes]
rs17083377	0.97[ASN][1000 genomes]
rs17312456	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17314074	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17314762	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17314797	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17314825	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17372057	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17372615	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17372649	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17372725	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17374166	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17374627	0.85[EUR][1000 genomes]
rs1901736	0.97[ASN][1000 genomes]
rs1982439	0.97[ASN][1000 genomes]
rs2045019	0.94[ASN][1000 genomes]
rs2045020	0.97[ASN][1000 genomes]
rs2045021	0.91[ASN][1000 genomes]
rs2084916	0.97[ASN][1000 genomes]
rs2290937	0.82[ASN][1000 genomes]
rs28412976	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28418572	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28526002	0.85[ASN][1000 genomes]
rs28534784	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28575883	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28594545	0.85[ASN][1000 genomes]
rs28610997	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28645862	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28705226	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2924374	0.88[ASN][1000 genomes]
rs34454564	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34592268	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34595581	0.82[ASN][1000 genomes]
rs34621188	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34673483	0.85[EUR][1000 genomes]
rs34891708	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34967135	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35107028	0.88[ASN][1000 genomes]
rs35372313	0.85[ASN][1000 genomes]
rs35426871	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35496867	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35747258	0.88[ASN][1000 genomes]
rs35791029	0.85[ASN][1000 genomes]
rs35878747	0.85[ASN][1000 genomes]
rs55724660	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55947981	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56108532	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6556834	0.97[ASN][1000 genomes]
rs6556839	0.88[ASN][1000 genomes]
rs66564678	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67150649	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67328989	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67914792	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs68122392	0.85[ASN][1000 genomes]
rs6859757	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6865441	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6868067	0.80[ASN][1000 genomes]
rs6874766	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6877030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6877616	0.85[ASN][1000 genomes]
rs6879620	0.97[ASN][1000 genomes]
rs6881815	0.91[ASN][1000 genomes]
rs6890998	0.85[ASN][1000 genomes]
rs6892055	0.94[ASN][1000 genomes]
rs6895356	0.85[ASN][1000 genomes]
rs6898507	0.85[ASN][1000 genomes]
rs6898842	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72786647	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72786662	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72786702	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7701011	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7701114	0.85[ASN][1000 genomes]
rs7701314	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7701974	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7702348	0.80[ASN][1000 genomes]
rs7702649	0.85[ASN][1000 genomes]
rs7713956	0.97[ASN][1000 genomes]
rs7715562	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7717718	0.80[ASN][1000 genomes]
rs7729807	0.91[ASN][1000 genomes]
rs7734897	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7736620	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7736892	0.94[ASN][1000 genomes]
rs896729	0.97[ASN][1000 genomes]
rs9314086	0.85[ASN][1000 genomes]
rs9314092	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9314093	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv830405	chr5:93086825-93258518	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv882384	chr5:93136661-93380123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93162000-93215000	Weak transcription	Aorta	Aorta
2	chr5:93174400-93216800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr5:93174800-93181400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr5:93175000-93183400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:93177400-93209200	Weak transcription	Gastric	stomach
6	chr5:93179200-93181800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:93179600-93181400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:93179600-93181400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
9	chr5:93179800-93181000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
10	chr5:93179800-93181400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
11	chr5:93179800-93181600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
12	chr5:93179800-93182000	ZNF genes & repeats	Dnd41	blood
13	chr5:93180000-93181400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr5:93180000-93181600	ZNF genes & repeats	Liver	Liver
15	chr5:93180000-93181800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
16	chr5:93180200-93181400	ZNF genes & repeats	Primary T cells from cord blood	blood
17	chr5:93180200-93193600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr5:93180400-93181200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
19	chr5:93180400-93181400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
20	chr5:93180400-93181600	ZNF genes & repeats	Primary B cells from cord blood	blood
21	chr5:93180400-93181600	ZNF genes & repeats	Fetal Lung	lung
22	chr5:93180400-93181600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
23	chr5:93180400-93181800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
24	chr5:93180600-93184400	Weak transcription	Fetal Heart	heart
25	chr5:93180600-93195200	Weak transcription	Duodenum Mucosa	Duodenum
26	chr5:93180800-93181400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr5:93180800-93184800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr5:93180800-93193400	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr5:93180800-93203600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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