Variant report

Variant	rs10036024
Chromosome Location	chr5:93074804-93074805
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10036891	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10038424	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10038828	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10038831	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10045836	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10051878	0.82[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10052662	1.00[CEU][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap]
rs10054790	1.00[CEU][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap]
rs10061377	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10064368	1.00[CEU][hapmap]
rs10066431	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10075217	0.92[CEU][hapmap];0.82[MEX][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10079708	1.00[CEU][hapmap]
rs10214278	1.00[CEU][hapmap]
rs1031424	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10476590	1.00[CEU][hapmap]
rs12153021	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12188163	1.00[CEU][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap]
rs12716453	1.00[CEU][hapmap]
rs12716454	1.00[CEU][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap]
rs13153987	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13154000	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13154650	1.00[CEU][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13155452	1.00[CEU][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13156202	1.00[CEU][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13161885	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13164315	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13165400	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13171131	1.00[CEU][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap]
rs13182631	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13357713	1.00[CEU][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13361613	1.00[CEU][hapmap];0.88[TSI][hapmap]
rs1470150	1.00[CEU][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs167570	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17312456	1.00[CEU][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17314074	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17314762	1.00[CEU][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap]
rs17314797	1.00[CEU][hapmap]
rs17314825	1.00[CEU][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap]
rs17372057	1.00[CEU][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17372615	0.83[CEU][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17372649	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17372725	1.00[CEU][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17374166	1.00[CEU][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap]
rs28418572	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28534784	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34891708	0.87[EUR][1000 genomes]
rs35107028	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs36042718	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs66564678	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67914792	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6859757	1.00[CEU][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6874766	1.00[CEU][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs6877030	1.00[CEU][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6892055	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6898842	0.81[EUR][1000 genomes]
rs72786647	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72786662	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7715562	1.00[CEU][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap]
rs7736624	0.82[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10036024	MAGOHB	trans	cerebellum	SCAN

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93038400-93076200	Weak transcription	Ovary	ovary
2	chr5:93040600-93088600	Weak transcription	Aorta	Aorta
3	chr5:93043000-93076400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr5:93057400-93080600	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr5:93060800-93076200	Weak transcription	Left Ventricle	heart
6	chr5:93065200-93075000	Weak transcription	Psoas Muscle	Psoas
7	chr5:93065200-93078400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr5:93066000-93087400	Weak transcription	Dnd41	blood
9	chr5:93066400-93076400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr5:93066400-93083400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr5:93068000-93075200	Weak transcription	Fetal Lung	lung
12	chr5:93068000-93076200	Weak transcription	Fetal Intestine Small	intestine
13	chr5:93068000-93076400	Weak transcription	Pancreas	Pancrea
14	chr5:93068200-93078000	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr5:93069800-93076200	Weak transcription	Gastric	stomach
16	chr5:93069800-93076400	Weak transcription	Adipose Nuclei	Adipose
17	chr5:93070000-93080400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr5:93070000-93108200	Weak transcription	Thymus	Thymus
19	chr5:93070400-93080400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr5:93070400-93087400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr5:93070400-93108200	Weak transcription	Liver	Liver
22	chr5:93071600-93082400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr5:93071800-93076200	Weak transcription	Primary T cells from cord blood	blood
24	chr5:93071800-93082600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr5:93072000-93076200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr5:93072000-93076200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr5:93072000-93078200	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr5:93072000-93082200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr5:93072800-93078600	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr5:93072800-93096000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr5:93073200-93075800	Strong transcription	Primary B cells from cord blood	blood
32	chr5:93073600-93091600	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr5:93073800-93076400	Weak transcription	Esophagus	oesophagus
34	chr5:93073800-93076400	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr5:93074000-93087000	Weak transcription	Primary hematopoietic stem cells	blood
36	chr5:93074200-93076600	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr5:93074400-93076000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr5:93074600-93076200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr5:93074600-93076200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr5:93074600-93076200	Weak transcription	Fetal Muscle Leg	muscle
41	chr5:93074600-93076200	Weak transcription	Fetal Stomach	stomach
42	chr5:93074600-93076200	Weak transcription	Right Ventricle	heart
43	chr5:93074600-93078000	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr5:93074600-93082600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr5:93074800-93075000	Weak transcription	Primary B cells from peripheral blood	blood
46	chr5:93074800-93078000	Weak transcription	Brain Germinal Matrix	brain

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