Variant report

Variant	rs10036891
Chromosome Location	chr5:93171738-93171739
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 150 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:147)

rs_ID	r²[population]
rs10036024	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10036829	0.83[AMR][1000 genomes]
rs10038424	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10038828	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10038831	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10044139	0.83[AMR][1000 genomes]
rs10045836	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10050465	0.83[AMR][1000 genomes]
rs10051878	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10052662	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10053405	0.84[EUR][1000 genomes]
rs10054790	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10054903	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10055340	0.83[AMR][1000 genomes]
rs10055741	0.83[AMR][1000 genomes]
rs10056879	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10057130	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10057605	0.83[AMR][1000 genomes]
rs10057814	0.83[AMR][1000 genomes]
rs10058331	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10060160	0.86[AMR][1000 genomes]
rs10061080	0.80[AMR][1000 genomes]
rs10061099	0.83[AMR][1000 genomes]
rs10061377	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10062711	0.83[AMR][1000 genomes]
rs10063612	0.83[AMR][1000 genomes]
rs10064368	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10064520	0.83[AMR][1000 genomes]
rs10065056	0.80[AMR][1000 genomes]
rs10066431	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10066791	0.83[AMR][1000 genomes]
rs10067259	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10072232	0.83[AMR][1000 genomes]
rs10072592	0.86[AMR][1000 genomes]
rs10075217	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10076052	0.83[AMR][1000 genomes]
rs10076192	0.86[AMR][1000 genomes]
rs10078194	0.80[AMR][1000 genomes]
rs10078941	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10079708	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10214278	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1031424	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10476522	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10476590	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10476596	0.86[AMR][1000 genomes]
rs10476597	0.86[AMR][1000 genomes]
rs10476598	0.83[AMR][1000 genomes]
rs10476599	0.83[AMR][1000 genomes]
rs10476601	0.83[AMR][1000 genomes]
rs10514380	0.80[AMR][1000 genomes]
rs12109629	0.83[AMR][1000 genomes]
rs12152763	0.86[AMR][1000 genomes]
rs12153021	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12153501	0.83[AMR][1000 genomes]
rs12153506	0.83[AMR][1000 genomes]
rs12153788	0.83[AMR][1000 genomes]
rs12188163	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12716453	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12716454	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12716456	0.83[AMR][1000 genomes]
rs12716457	0.83[AMR][1000 genomes]
rs12716460	0.80[AMR][1000 genomes]
rs13153245	0.83[AMR][1000 genomes]
rs13153987	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13154000	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13154650	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13155452	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13156202	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13156865	0.80[AMR][1000 genomes]
rs13161885	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13164315	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13165147	0.80[AMR][1000 genomes]
rs13165400	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13169675	0.86[AMR][1000 genomes]
rs13170509	0.83[AMR][1000 genomes]
rs13171131	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13173952	0.80[AMR][1000 genomes]
rs13177800	0.86[AMR][1000 genomes]
rs13182631	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13185660	0.83[AMR][1000 genomes]
rs13356088	0.83[AMR][1000 genomes]
rs13357713	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13361613	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1470150	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs167570	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17312456	0.93[AMR][1000 genomes]
rs17314074	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17314762	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17314797	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17314825	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17372057	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17372615	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17372649	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17372725	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17374166	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17374627	0.86[AMR][1000 genomes]
rs2085960	0.83[AMR][1000 genomes]
rs28412976	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs28418572	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28534784	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs28575883	0.83[AMR][1000 genomes]
rs28610997	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs28645862	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28705226	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34138834	0.80[AMR][1000 genomes]
rs34454564	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34592268	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34595581	0.83[AMR][1000 genomes]
rs34621188	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34673483	0.80[AMR][1000 genomes]
rs34891708	0.94[EUR][1000 genomes]
rs34967135	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35075119	0.80[AMR][1000 genomes]
rs35107028	0.89[AMR][1000 genomes]
rs35426871	0.83[AMR][1000 genomes]
rs35496867	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35747258	0.83[AMR][1000 genomes]
rs36042718	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55724660	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55947981	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56108532	0.84[EUR][1000 genomes]
rs66564678	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66696214	0.83[AMR][1000 genomes]
rs67150649	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67328989	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs67914792	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6859757	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6865441	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6874766	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6877030	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6892055	0.86[AMR][1000 genomes]
rs6898842	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71641007	0.83[AMR][1000 genomes]
rs72786647	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72786662	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72786702	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7701011	0.80[AMR][1000 genomes]
rs7701314	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7701974	0.83[AMR][1000 genomes]
rs7715562	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7728736	0.83[AMR][1000 genomes]
rs7734897	0.80[AMR][1000 genomes]
rs7736620	0.80[AMR][1000 genomes]
rs9314092	0.83[AMR][1000 genomes]
rs9314095	0.80[AMR][1000 genomes]
rs9314100	0.80[AMR][1000 genomes]
rs9885329	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv830405	chr5:93086825-93258518	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv882384	chr5:93136661-93380123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93111600-93179800	Weak transcription	Left Ventricle	heart
2	chr5:93131200-93179200	Weak transcription	Ovary	ovary
3	chr5:93137600-93180400	Weak transcription	Fetal Lung	lung
4	chr5:93143200-93180000	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr5:93146800-93180200	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr5:93147400-93179800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr5:93162000-93215000	Weak transcription	Aorta	Aorta
8	chr5:93162200-93179600	Weak transcription	Primary B cells from peripheral blood	blood
9	chr5:93163800-93179800	Weak transcription	Fetal Muscle Leg	muscle
10	chr5:93164600-93180400	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr5:93165000-93179800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr5:93166400-93180400	Weak transcription	Primary B cells from cord blood	blood
13	chr5:93167400-93178200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr5:93167400-93180200	Weak transcription	Primary T cells from cord blood	blood
15	chr5:93168200-93179400	Weak transcription	HSMM	muscle

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