Variant report

Variant	rs17314074
Chromosome Location	chr5:93161467-93161468
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs10036024	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10036829	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs10036891	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10038424	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10038828	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10038831	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10045836	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10050465	0.92[CEU][hapmap]
rs10051878	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10052662	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10053405	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10054790	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs10054903	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10055340	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs10055741	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs10056879	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10057130	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10058331	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10061377	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10062711	0.92[CEU][hapmap]
rs10064368	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10066431	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10066791	0.92[CEU][hapmap]
rs10067259	0.81[EUR][1000 genomes]
rs10075217	0.93[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10076052	0.81[EUR][1000 genomes]
rs10078941	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10079708	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs10214278	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1031424	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10476522	0.84[EUR][1000 genomes]
rs10476590	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10476591	0.85[CEU][hapmap]
rs10476596	1.00[AFR][1000 genomes]
rs12109629	0.92[CEU][hapmap]
rs12153021	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12188163	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12716453	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12716454	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs13153987	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13154000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13154650	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13155452	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13156202	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13161885	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13164315	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13165400	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13169675	0.81[EUR][1000 genomes]
rs13171131	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs13173952	0.81[EUR][1000 genomes]
rs13177800	0.81[EUR][1000 genomes]
rs13182631	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13185660	0.81[EUR][1000 genomes]
rs13356088	1.00[AFR][1000 genomes]
rs13357713	0.92[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13361613	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1470150	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs167570	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17312456	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17314762	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17314797	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17314825	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17372057	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17372615	0.85[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17372649	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17372725	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17374166	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17374627	0.92[CEU][hapmap];1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2290937	0.92[CEU][hapmap]
rs28412976	0.82[EUR][1000 genomes]
rs28418572	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28534784	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28610997	0.82[EUR][1000 genomes]
rs28645862	0.84[EUR][1000 genomes]
rs28705226	0.86[EUR][1000 genomes]
rs34454564	0.85[EUR][1000 genomes]
rs34592268	0.86[EUR][1000 genomes]
rs34621188	0.86[EUR][1000 genomes]
rs34673483	0.81[EUR][1000 genomes]
rs34891708	0.96[EUR][1000 genomes]
rs34967135	0.87[EUR][1000 genomes]
rs35107028	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35426871	0.81[EUR][1000 genomes]
rs35496867	0.87[EUR][1000 genomes]
rs36042718	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55724660	0.86[EUR][1000 genomes]
rs55947981	0.86[EUR][1000 genomes]
rs56108532	0.86[EUR][1000 genomes]
rs66564678	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67150649	0.81[EUR][1000 genomes]
rs67328989	0.85[EUR][1000 genomes]
rs67914792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6859757	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6865441	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6874766	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6877030	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6892055	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6898842	0.89[EUR][1000 genomes]
rs72786647	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72786662	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72786702	0.86[EUR][1000 genomes]
rs7701011	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs7701314	0.86[EUR][1000 genomes]
rs7701974	0.92[CEU][hapmap]
rs7715562	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7734897	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs7736620	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs9314092	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs9314093	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv830405	chr5:93086825-93258518	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv882384	chr5:93136661-93380123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93101200-93164200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr5:93111600-93179800	Weak transcription	Left Ventricle	heart
3	chr5:93120200-93161800	Weak transcription	Primary B cells from peripheral blood	blood
4	chr5:93131200-93179200	Weak transcription	Ovary	ovary
5	chr5:93137000-93165400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr5:93137000-93168400	Weak transcription	Pancreas	Pancrea
7	chr5:93137000-93168600	Weak transcription	Fetal Stomach	stomach
8	chr5:93137200-93166800	Weak transcription	HSMM	muscle
9	chr5:93137600-93180400	Weak transcription	Fetal Lung	lung
10	chr5:93143200-93180000	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr5:93146800-93180200	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr5:93147400-93179800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr5:93151800-93164800	Weak transcription	Primary B cells from cord blood	blood
14	chr5:93153800-93166800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:93156400-93167000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:93156600-93169200	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr5:93158000-93164200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr5:93158000-93170400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr5:93158200-93164200	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr5:93158200-93166600	Weak transcription	Primary T cells from cord blood	blood
21	chr5:93158400-93168000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr5:93159000-93161600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr5:93159000-93166200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr5:93160000-93164000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr5:93161200-93167600	Weak transcription	HSMMtube	muscle
26	chr5:93161200-93168800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr5:93161400-93164200	Weak transcription	Primary hematopoietic stem cells	blood

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