Variant report

Variant	rs10067259
Chromosome Location	chr5:93290838-93290839
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 180 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:178)

rs_ID	r²[population]
rs10036829	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10036891	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10038424	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10038828	0.91[ASN][1000 genomes]
rs10038831	0.91[ASN][1000 genomes]
rs10044066	0.81[EUR][1000 genomes]
rs10044139	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10045836	0.91[ASN][1000 genomes]
rs10050465	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10052662	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10053405	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10054790	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10054903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10055340	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10055741	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10056879	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10057130	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10057605	0.83[EUR][1000 genomes]
rs10057664	0.88[ASN][1000 genomes]
rs10057814	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10058331	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10059230	0.83[ASN][1000 genomes]
rs10060160	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10061080	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10061099	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10061377	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10062711	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10063612	0.91[EUR][1000 genomes]
rs10064368	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10064520	0.84[EUR][1000 genomes]
rs10065056	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10066431	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10066791	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10070350	0.83[ASN][1000 genomes]
rs10070390	0.83[ASN][1000 genomes]
rs10072232	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10072592	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10075217	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10076052	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10076192	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10078194	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10078941	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10079708	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10214278	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1026279	0.88[ASN][1000 genomes]
rs1031424	0.91[ASN][1000 genomes]
rs10440717	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10476522	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10476588	0.88[ASN][1000 genomes]
rs10476590	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10476591	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10476596	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10476597	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10476598	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10476599	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10476601	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10476602	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10514380	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11135397	0.88[ASN][1000 genomes]
rs12054831	0.88[ASN][1000 genomes]
rs12109629	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12152763	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12153501	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12153506	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12153788	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12188163	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12374432	0.83[ASN][1000 genomes]
rs12374463	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12374470	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12374488	0.83[ASN][1000 genomes]
rs12653528	0.88[ASN][1000 genomes]
rs12716453	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12716454	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12716456	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12716457	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12716460	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12716462	0.83[ASN][1000 genomes]
rs13153245	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13153987	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13155452	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13156202	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13156865	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13164315	0.91[ASN][1000 genomes]
rs13165147	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13169675	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13170509	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13171131	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13173952	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13177800	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13182631	0.91[ASN][1000 genomes]
rs13185660	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13186579	0.92[EUR][1000 genomes]
rs13356088	0.86[EUR][1000 genomes]
rs13357713	0.91[ASN][1000 genomes]
rs13361613	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1349711	0.88[ASN][1000 genomes]
rs1470150	0.91[ASN][1000 genomes]
rs17083377	0.88[ASN][1000 genomes]
rs17083455	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17314074	0.81[EUR][1000 genomes]
rs17314762	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17314797	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17314825	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17315943	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17372615	0.91[ASN][1000 genomes]
rs17372649	0.91[ASN][1000 genomes]
rs17372725	0.91[ASN][1000 genomes]
rs17374166	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17374627	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1901736	0.88[ASN][1000 genomes]
rs1982439	0.88[ASN][1000 genomes]
rs2045019	0.85[ASN][1000 genomes]
rs2045020	0.88[ASN][1000 genomes]
rs2045021	0.83[ASN][1000 genomes]
rs2084916	0.88[ASN][1000 genomes]
rs2085960	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2290937	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28412976	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28418572	0.85[ASN][1000 genomes]
rs28575883	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28610997	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28633397	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28645862	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28705226	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34138834	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34184666	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34384674	0.83[ASN][1000 genomes]
rs34454564	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34592268	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34595581	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34621188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34673483	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34891708	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34967135	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35075119	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35426871	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35496867	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35747258	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36042718	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55724660	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55832164	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55947981	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56108532	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6556834	0.88[ASN][1000 genomes]
rs66564678	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66696214	0.86[EUR][1000 genomes]
rs67150649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67328989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6859757	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6865441	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6874766	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6877030	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6879620	0.88[ASN][1000 genomes]
rs6881815	0.83[ASN][1000 genomes]
rs6892055	0.85[ASN][1000 genomes]
rs6898842	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71641007	0.86[EUR][1000 genomes]
rs72786702	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72788365	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7701011	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7701314	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7701974	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7702521	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7713956	0.88[ASN][1000 genomes]
rs7715562	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7728736	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7729807	0.83[ASN][1000 genomes]
rs7734897	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7736620	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7736892	0.85[ASN][1000 genomes]
rs896729	0.88[ASN][1000 genomes]
rs9314092	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9314093	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9314095	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9314096	0.81[EUR][1000 genomes]
rs9314099	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9314100	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9885329	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv882384	chr5:93136661-93380123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93194200-93307600	Weak transcription	Left Ventricle	heart
2	chr5:93263200-93326400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:93263400-93303800	Weak transcription	HSMMtube	muscle
4	chr5:93278000-93304800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:93279400-93292000	Weak transcription	Right Ventricle	heart
6	chr5:93281600-93300200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr5:93282000-93291400	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr5:93282200-93309600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr5:93282600-93294000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr5:93282800-93312000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr5:93283000-93299000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr5:93284400-93292200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr5:93284400-93300200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:93284600-93297600	Weak transcription	Fetal Thymus	thymus
15	chr5:93284800-93292400	Weak transcription	Thymus	Thymus
16	chr5:93284800-93306400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr5:93287000-93307600	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr5:93287400-93291600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr5:93287400-93291800	Strong transcription	Primary B cells from cord blood	blood
20	chr5:93287800-93292400	Weak transcription	Gastric	stomach
21	chr5:93287800-93309400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr5:93288000-93293000	Weak transcription	Fetal Kidney	kidney
23	chr5:93288000-93295800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr5:93288200-93299600	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr5:93288400-93293200	Weak transcription	Brain Anterior Caudate	brain
26	chr5:93288600-93291800	Weak transcription	Liver	Liver
27	chr5:93288600-93294600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr5:93288800-93292000	Strong transcription	Primary B cells from peripheral blood	blood
29	chr5:93289000-93291000	Strong transcription	Fetal Stomach	stomach
30	chr5:93289000-93291600	Weak transcription	Brain Hippocampus Middle	brain
31	chr5:93289000-93292000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr5:93289000-93292400	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr5:93289000-93311200	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr5:93289200-93291000	Strong transcription	Fetal Intestine Small	intestine
35	chr5:93289200-93291000	Strong transcription	Ovary	ovary
36	chr5:93289200-93292600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr5:93289400-93291000	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr5:93289400-93292000	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr5:93289400-93296000	Weak transcription	Placenta	Placenta
40	chr5:93289600-93291000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr5:93289600-93291000	Strong transcription	Aorta	Aorta
42	chr5:93289600-93291200	Strong transcription	Adipose Nuclei	Adipose
43	chr5:93289600-93291200	Strong transcription	Fetal Muscle Leg	muscle
44	chr5:93289600-93291800	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr5:93289800-93291000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr5:93289800-93291800	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr5:93289800-93292000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr5:93289800-93292200	Weak transcription	Lung	lung
49	chr5:93289800-93292400	Weak transcription	Fetal Brain Male	brain
50	chr5:93290000-93291000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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