Variant report

Variant	rs10063612
Chromosome Location	chr5:93401133-93401134
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 175 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:171)

rs_ID	r²[population]
rs10035340	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10036829	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10036891	0.83[AMR][1000 genomes]
rs10040648	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10044066	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10044139	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10050465	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10052662	0.88[EUR][1000 genomes]
rs10053405	0.88[EUR][1000 genomes]
rs10054790	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10054903	0.88[EUR][1000 genomes]
rs10055340	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10055741	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10055994	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10056879	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10057130	0.88[EUR][1000 genomes]
rs10057605	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10057814	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10058331	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10059230	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10060160	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10061080	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10061099	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10061377	0.83[AMR][1000 genomes]
rs10062711	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10064368	0.88[EUR][1000 genomes]
rs10064520	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10065056	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10066791	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10067259	0.91[EUR][1000 genomes]
rs10070390	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10072232	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10072592	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10076052	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10076192	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10078194	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10078941	0.88[EUR][1000 genomes]
rs10079708	0.86[EUR][1000 genomes]
rs10214278	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10440717	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10476522	0.90[EUR][1000 genomes]
rs10476590	0.88[EUR][1000 genomes]
rs10476591	0.84[EUR][1000 genomes]
rs10476596	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10476597	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10476598	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10476599	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10476601	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10476602	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10514380	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10514382	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12109629	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12152763	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12153501	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12153506	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12153788	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12187701	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12188163	0.88[EUR][1000 genomes]
rs12188453	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12189466	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12374432	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12374463	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12374470	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12374488	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12716453	0.88[EUR][1000 genomes]
rs12716454	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12716456	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12716457	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12716460	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12716462	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13153245	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13154249	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13156002	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13156865	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13163610	0.83[AMR][1000 genomes]
rs13165147	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13169675	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13170509	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13171131	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13173952	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13174700	0.83[AMR][1000 genomes]
rs13177800	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13181660	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13185608	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13185660	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13186579	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13356088	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13361613	0.88[EUR][1000 genomes]
rs17083455	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17314762	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs17314797	0.88[EUR][1000 genomes]
rs17314825	0.88[EUR][1000 genomes]
rs17315943	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17323433	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17374166	0.88[EUR][1000 genomes]
rs17374627	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17376207	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17376456	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2085960	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2290937	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28412976	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28539612	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28575883	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28610997	0.84[EUR][1000 genomes]
rs28633397	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28637444	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28645862	0.86[EUR][1000 genomes]
rs28705226	0.88[EUR][1000 genomes]
rs34013242	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34068652	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34138834	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34184666	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34384674	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs34454564	0.87[EUR][1000 genomes]
rs34592268	0.88[EUR][1000 genomes]
rs34595581	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34621188	0.88[EUR][1000 genomes]
rs34673483	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34717672	0.91[ASN][1000 genomes]
rs34756085	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34854140	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34967135	0.87[EUR][1000 genomes]
rs35075119	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35184505	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35426871	0.91[EUR][1000 genomes]
rs35496867	0.87[EUR][1000 genomes]
rs35747258	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36026719	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs36091096	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3940842	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4547912	0.90[AMR][1000 genomes]
rs55724660	0.88[EUR][1000 genomes]
rs55832164	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55947981	0.88[EUR][1000 genomes]
rs56046246	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56108532	0.88[EUR][1000 genomes]
rs56373208	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58734583	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59472588	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61132622	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66696214	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66978370	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs67066109	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67150649	0.91[EUR][1000 genomes]
rs67328989	0.87[EUR][1000 genomes]
rs6865441	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6867042	0.90[AMR][1000 genomes]
rs6874766	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6898842	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71641007	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72786702	0.88[EUR][1000 genomes]
rs72788365	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7701011	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7701314	0.88[EUR][1000 genomes]
rs7701974	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7702521	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7715562	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7718842	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7728736	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7734897	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7736620	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9314092	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9314093	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9314095	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9314096	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9314099	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9314100	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9314102	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9885329	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9968691	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9968749	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1023191	chr5:93351646-93947928	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv537808	chr5:93351646-93947928	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	esv2753025	chr5:93356544-93812844	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93380400-93403800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:93380600-93402600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:93380600-93403200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr5:93393600-93413000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr5:93398400-93402000	ZNF genes & repeats	Primary B cells from cord blood	blood
6	chr5:93398600-93402600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr5:93398800-93404200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:93398800-93430800	Weak transcription	Pancreas	Pancrea
9	chr5:93399200-93401200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
10	chr5:93399200-93401200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
11	chr5:93399400-93403800	Weak transcription	Esophagus	oesophagus
12	chr5:93400000-93401200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
13	chr5:93400200-93401200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
14	chr5:93400400-93401400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr5:93400600-93401200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr5:93400800-93401200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr5:93400800-93401200	ZNF genes & repeats	Aorta	Aorta
18	chr5:93400800-93401200	ZNF genes & repeats	Liver	Liver
19	chr5:93400800-93401200	ZNF genes & repeats	Fetal Stomach	stomach
20	chr5:93400800-93401200	ZNF genes & repeats	Fetal Thymus	thymus
21	chr5:93400800-93401200	ZNF genes & repeats	Left Ventricle	heart
22	chr5:93400800-93401200	ZNF genes & repeats	Ovary	ovary
23	chr5:93400800-93401400	ZNF genes & repeats	Fetal Intestine Small	intestine
24	chr5:93400800-93401600	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
25	chr5:93400800-93403600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
26	chr5:93401000-93401200	Weak transcription	Gastric	stomach

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