Variant report

Variant	rs9314099
Chromosome Location	chr5:93447375-93447376
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:462)
CpG islands
(count:61)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:462 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr5:93446803-93447988	K562	blood:	n/a	n/a
2	EP300	chr5:93447020-93447641	HepG2	liver:	n/a	chr5:93447354-93447361
3	MAZ	chr5:93446555-93447728	IMR90	lung:	n/a	n/a
4	PML	chr5:93447017-93447636	K562	blood:	n/a	n/a
5	POLR2A	chr5:93446805-93447789	U87	brain:	n/a	n/a
6	POLR2A	chr5:93447079-93447748	GM12892	blood:	n/a	n/a
7	POLR2A	chr5:93446874-93447700	Gliobla	brain:	n/a	n/a
8	TBP	chr5:93446920-93447711	HepG2	liver:	n/a	n/a
9	MAX	chr5:93446977-93447684	HepG2	liver:	n/a	n/a
10	MYC	chr5:93446876-93447613	MCF10A-Er-Src	breast:	n/a	n/a
11	POLR2A	chr5:93446985-93447686	GM18526	blood:	n/a	n/a
12	RUNX3	chr5:93446842-93447764	GM12878	blood:	n/a	chr5:93447194-93447209
13	CBX3	chr5:93447246-93447661	K562	blood:	n/a	n/a
14	E2F4	chr5:93447212-93447528	GM12878	blood:	n/a	n/a
15	CTCF	chr5:93447260-93447410	GM12874	blood:	n/a	n/a
16	ZBTB33	chr5:93447173-93447568	HCT-116	colon:	n/a	n/a
17	MYC	chr5:93446958-93447765	K562	blood:	n/a	n/a
18	BACH1	chr5:93447051-93447621	H1-hESC	embryonic stem cell:	n/a	n/a
19	YY1	chr5:93447154-93447697	GM12892	blood:	n/a	chr5:93447240-93447254 chr5:93447246-93447257
20	TAF1	chr5:93446810-93447636	Hela-S3	cervix:	n/a	n/a
21	GABPA	chr5:93447207-93447489	Hela-S3	cervix:	n/a	n/a
22	HCFC1	chr5:93445990-93448092	Hela-S3	cervix:	n/a	n/a
23	JUND	chr5:93447152-93447584	HepG2	liver:	n/a	n/a
24	TCF12	chr5:93446681-93447793	A549	lung:	n/a	n/a
25	CHD1	chr5:93446795-93447693	GM12878	blood:	n/a	chr5:93447252-93447262
26	POLR2A	chr5:93446873-93447633	K562	blood:	n/a	n/a
27	MYC	chr5:93447141-93447560	K562	blood:	n/a	n/a
28	POLR2A	chr5:93446962-93447817	HUVEC	blood vessel:	n/a	n/a
29	E2F6	chr5:93446747-93447803	H1-hESC	embryonic stem cell:	n/a	chr5:93447250-93447261 chr5:93447311-93447322
30	POLR2A	chr5:93446929-93447646	GM12878	blood:	n/a	n/a
31	GTF2F1	chr5:93447174-93447517	H1-hESC	embryonic stem cell:	n/a	n/a
32	E2F6	chr5:93446765-93447796	A549	lung:	n/a	chr5:93447250-93447261 chr5:93447311-93447322
33	ZEB1	chr5:93447135-93447498	GM12878	blood:	n/a	n/a
34	FOS	chr5:93447308-93447513	MCF10A-Er-Src	breast:	n/a	n/a
35	SMC3	chr5:93447279-93447683	HepG2	liver:	n/a	n/a
36	SIN3AK20	chr5:93447081-93447548	HepG2	liver:	n/a	n/a
37	MYC	chr5:93446920-93447727	A549	lung:	n/a	n/a
38	SP1	chr5:93447130-93447559	GM12878	blood:	n/a	chr5:93447259-93447269 chr5:93447220-93447234 chr5:93447424-93447433 chr5:93447422-93447434
39	POLR2A	chr5:93446909-93447589	A549	lung:	n/a	n/a
40	TAF7	chr5:93446953-93447573	H1-hESC	embryonic stem cell:	n/a	n/a
41	TEAD4	chr5:93446853-93447501	K562	blood:	n/a	n/a
42	HEY1	chr5:93447042-93447604	K562	blood:	n/a	n/a
43	YY1	chr5:93447154-93447440	K562	blood:	n/a	chr5:93447240-93447254 chr5:93447246-93447257
44	CTCF	chr5:93447240-93447390	HPAF	blood vessel:	n/a	n/a
45	CREB1	chr5:93446841-93447746	HepG2	liver:	n/a	n/a
46	ELK4	chr5:93447239-93447633	HEK293	kidney:	n/a	chr5:93447351-93447362 chr5:93447415-93447426
47	YY1	chr5:93446915-93447537	HepG2	liver:	n/a	chr5:93447240-93447254 chr5:93447246-93447257
48	TAF1	chr5:93446809-93447738	H1-hESC	embryonic stem cell:	n/a	n/a
49	REST	chr5:93447303-93447733	HL-60	blood:	n/a	chr5:93447431-93447444
50	HA-E2F1	chr5:93446771-93447761	MCF-7	breast:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:93447329-93447379	IMR90	lung:	fetal
2	chr5:93447329-93447379	HMEC	breast:	n/a
3	chr5:93447329-93447379	AoSMC	blood vessel:	n/a
4	chr5:93447329-93447379	BJ	skin:	n/a
5	chr5:93447329-93447379	ovcar-3	ovarian:	n/a
6	chr5:93447329-93447379	AG04450	lung:	fetal
7	chr5:93447329-93447379	Hepatocyte	liver:	n/a
8	chr5:93447329-93447379	HUVEC	blood vessel:	n/a
9	chr5:93447329-93447379	GM12878	blood:	n/a
10	chr5:93447329-93447379	NHDF-neo	bronchial:	n/a
11	chr5:93447329-93447379	GM19239	blood:	n/a
12	chr5:93447329-93447379	MCF10A-Er-Src	breast:	n/a
13	chr5:93447329-93447379	AG09319	gingival:	n/a
14	chr5:93447329-93447379	PANC-1	pancreas:	n/a
15	chr5:93447329-93447379	ECC-1	luminal epithelium:	n/a
16	chr5:93447329-93447379	RPTEC	kidney:	n/a
17	chr5:93447329-93447379	Hela-S3	cervix:	n/a
18	chr5:93447329-93447379	AG04449	skin:	fetal
19	chr5:93447329-93447379	HRPEpiC	eye:	n/a
20	chr5:93447329-93447379	HEEpiC	esophagus:	n/a
21	chr5:93447329-93447379	Caco-2	colon:	n/a
22	chr5:93447329-93447379	HRCEpiC	kidney:	n/a
23	chr5:93447329-93447379	HCT-116	colon:	n/a
24	chr5:93447329-93447379	GM12892	blood:	n/a
25	chr5:93447329-93447379	NH-A	brain:	n/a
26	chr5:93447329-93447379	LNCaP	prostate:	n/a
27	chr5:93447329-93447379	HAEpiC	amniotic membrane:	n/a
28	chr5:93447329-93447379	NHBE	bronchial:	n/a
29	chr5:93447329-93447379	BE2_C	brain:	n/a
30	chr5:93447329-93447379	U87	brain:	n/a
31	chr5:93447329-93447379	HL-60	blood:	n/a
32	chr5:93447329-93447379	PrEC	prostate:	n/a
33	chr5:93447329-93447379	HPAEpiC	pulmonary alveolar:	n/a
34	chr5:93447329-93447379	H1-hESC	embryonic stem cell:	embryo
35	chr5:93447329-93447379	K562	blood:	n/a
36	chr5:93447329-93447379	HIPEpiC	eye:	n/a
37	chr5:93447329-93447379	HEK293	kidney:	embryo
38	chr5:93447329-93447379	HepG2	liver:	n/a
39	chr5:93447329-93447379	AG10803	skin:	n/a
40	chr5:93447329-93447379	SK-N-MC	brain:	n/a
41	chr5:93447329-93447379	HRE	kidney:	n/a
42	chr5:93447329-93447379	PFSK-1	brain:	n/a
43	chr5:93447329-93447379	SK-N-SH	brain:	n/a
44	chr5:93447329-93447379	Jurkat	blood:	n/a
45	chr5:93447329-93447379	SAEC	small airway:	n/a
46	chr5:93447329-93447379	SK-N-SH_RA	brain:	n/a
47	chr5:93447329-93447379	MCF-7	breast:	n/a
48	chr5:93447329-93447379	HCM	heart:	n/a
49	chr5:93447329-93447379	A549	lung:	n/a
50	chr5:93447329-93447379	NB4	blood:	n/a

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:65439986..65440532-chr5:93446947..93447861,2	Hela-S3	cervix:
2	chr16:9184954..9185814-chr5:93446887..93447822,2	Hela-S3	cervix:
3	chr1:161719459..161720060-chr5:93447005..93447643,2	Hela-S3	cervix:
4	chr19:2456845..2457544-chr5:93447193..93447793,2	Hela-S3	cervix:
5	chr12:13044320..13044840-chr5:93446784..93447412,2	Hela-S3	cervix:
6	chr22:38245008..38245913-chr5:93447097..93447623,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
FAM172A	TF binding region
FAM172A	CpG island
ENSG00000176619	Chromatin interaction
ENSG00000182831	Chromatin interaction
ENSG00000013588	Chromatin interaction
ENSG00000100124	Chromatin interaction
ENSG00000100129	Chromatin interaction
ENSG00000153914	Chromatin interaction
ENSG00000081721	Chromatin interaction

Extended variants
information (count: 155 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:150)

rs_ID	r²[population]
rs10035340	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10036829	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10040648	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10044066	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10044139	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10050465	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10052662	0.93[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes]
rs10053405	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs10054790	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs10054903	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs10055340	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10055741	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10055994	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10056879	0.93[CEU][hapmap]
rs10057130	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs10057605	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10057814	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10058331	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs10059230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10060160	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10061080	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10061099	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10062711	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10063612	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10064368	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs10064520	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10065056	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10066791	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10067259	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10070390	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10072232	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10072592	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10076052	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10076192	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10078194	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10078941	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10079708	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs10440717	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10476522	0.81[EUR][1000 genomes]
rs10476591	0.93[CEU][hapmap];0.82[AMR][1000 genomes]
rs10476596	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10476597	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10476598	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10476599	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10476601	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10476602	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10514380	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10514382	0.93[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12109629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12152763	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12153501	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12153506	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12153788	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12187701	0.93[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12188163	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs12188453	0.93[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12189466	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12374432	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12374463	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12374470	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12374488	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12716453	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs12716454	0.85[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap]
rs12716456	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12716457	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12716460	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12716462	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13153245	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13154249	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13156002	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13156865	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13163610	0.93[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13165147	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13169675	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13170509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13173952	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13174700	0.91[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13177800	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13181660	0.93[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13185608	0.93[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13185660	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13186579	0.81[EUR][1000 genomes]
rs13356088	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13361613	0.93[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs17083455	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17314797	0.81[AMR][1000 genomes]
rs17314825	0.81[AMR][1000 genomes]
rs17315943	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17323433	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17374627	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17376207	0.93[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17376456	0.93[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2085960	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2290937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28539612	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28575883	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28633397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28637444	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28705226	0.81[AMR][1000 genomes]
rs34013242	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34068652	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34138834	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34184666	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34384674	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34592268	0.81[AMR][1000 genomes]
rs34595581	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34673483	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34717672	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34756085	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34854140	0.93[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35075119	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35184505	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35426871	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35747258	0.90[AMR][1000 genomes]
rs36026719	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36091096	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3940842	0.93[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4547912	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55724660	0.81[AMR][1000 genomes]
rs55832164	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55947981	0.81[AMR][1000 genomes]
rs56046246	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56373208	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58734583	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59472588	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61132622	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66696214	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66978370	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67066109	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67150649	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6865441	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs6867042	0.93[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71641007	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72788365	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7701011	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7701974	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7702521	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7718842	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7728736	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7734897	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7736620	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9314092	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9314093	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9314095	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9314096	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9314100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9314102	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9885329	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9968691	0.93[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9968749	0.93[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1023191	chr5:93351646-93947928	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv537808	chr5:93351646-93947928	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	esv2753025	chr5:93356544-93812844	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv530552	chr5:93416111-93588509	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93445800-93447800	Active TSS	Primary T cells from cord blood	blood
2	chr5:93446000-93447600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:93446000-93447600	Active TSS	HMEC	breast
4	chr5:93446000-93447800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr5:93446000-93447800	Flanking Active TSS	Primary hematopoietic stem cells	blood
6	chr5:93446000-93447800	Active TSS	Fetal Kidney	kidney
7	chr5:93446000-93447800	Active TSS	Rectal Smooth Muscle	rectum
8	chr5:93446000-93448000	Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr5:93446000-93448000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:93446000-93448000	Active TSS	Brain Angular Gyrus	brain
11	chr5:93446000-93448000	Active TSS	Rectal Mucosa Donor 29	rectum
12	chr5:93446000-93448000	Active TSS	NHDF-Ad	bronchial
13	chr5:93446000-93448000	Active TSS	NHLF	lung
14	chr5:93446000-93448200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:93446200-93447600	Active TSS	HSMM	muscle
16	chr5:93446200-93447800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr5:93446200-93447800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr5:93446200-93447800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr5:93446200-93447800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr5:93446200-93448000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr5:93446200-93448000	Active TSS	Brain Hippocampus Middle	brain
22	chr5:93446200-93448000	Active TSS	Stomach Smooth Muscle	stomach
23	chr5:93446200-93448200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr5:93446200-93448200	Active TSS	Colon Smooth Muscle	Colon
25	chr5:93446200-93448400	Active TSS	Brain Substantia Nigra	brain
26	chr5:93446400-93447400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
27	chr5:93446400-93447400	Active TSS	NH-A	brain
28	chr5:93446400-93447600	Active TSS	Fetal Intestine Large	intestine
29	chr5:93446400-93447800	Active TSS	H1 Cell Line	embryonic stem cell
30	chr5:93446400-93447800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr5:93446400-93447800	Active TSS	HUES64 Cell Line	embryonic stem cell
32	chr5:93446400-93447800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr5:93446400-93447800	Active TSS	Brain Cingulate Gyrus	brain
34	chr5:93446400-93447800	Active TSS	Fetal Intestine Small	intestine
35	chr5:93446400-93447800	Active TSS	Pancreatic Islets	Pancreatic Islet
36	chr5:93446400-93447800	Active TSS	Fetal Thymus	thymus
37	chr5:93446400-93447800	Active TSS	Ovary	ovary
38	chr5:93446400-93447800	Active TSS	Placenta Amnion	Placenta Amnion
39	chr5:93446400-93447800	Active TSS	Right Ventricle	heart
40	chr5:93446400-93448000	Active TSS	ES-I3 Cell Line	embryonic stem cell
41	chr5:93446400-93448000	Active TSS	HUES48 Cell Line	embryonic stem cell
42	chr5:93446400-93448000	Active TSS	iPS-20b Cell Line	embryonic stem cell
43	chr5:93446400-93448000	Active TSS	Breast Myoepithelial Primary Cells	Breast
44	chr5:93446400-93448000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr5:93446400-93448000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr5:93446400-93448000	Active TSS	Duodenum Smooth Muscle	Duodenum
47	chr5:93446400-93448000	Active TSS	Fetal Muscle Leg	muscle
48	chr5:93446400-93448000	Active TSS	Psoas Muscle	Psoas
49	chr5:93446400-93448000	Active TSS	GM12878-XiMat	blood
50	chr5:93446400-93448200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood

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