Variant report

Variant	rs13169675
Chromosome Location	chr5:93331284-93331285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 206 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:204)

rs_ID	r²[population]
rs10035340	0.90[AMR][1000 genomes]
rs10036829	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10036891	0.86[AMR][1000 genomes]
rs10038424	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10038828	0.82[ASN][1000 genomes]
rs10038831	0.82[ASN][1000 genomes]
rs10040648	0.90[AMR][1000 genomes]
rs10044066	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10044139	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10045836	0.82[ASN][1000 genomes]
rs10050465	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10051878	0.82[ASN][1000 genomes]
rs10052662	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10053405	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10054790	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10054903	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10055340	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10055741	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10055994	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10056879	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10057130	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10057605	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10057814	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10058331	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10059230	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10060160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10061080	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10061099	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10061377	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10062711	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10063612	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10064368	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10064520	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10065056	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10066431	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10066791	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10067259	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10070350	0.85[ASN][1000 genomes]
rs10070390	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10072232	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10072592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10075217	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10076052	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10076192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10078194	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10078941	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10079708	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10214278	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1031424	0.82[ASN][1000 genomes]
rs10440717	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10476522	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10476590	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10476591	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10476596	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10476597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10476598	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10476599	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10476601	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10476602	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10514380	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10514382	0.93[AMR][1000 genomes]
rs12109629	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12152763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12153501	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12153506	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12153788	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12187701	0.93[AMR][1000 genomes]
rs12188163	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12188453	0.93[AMR][1000 genomes]
rs12189466	0.86[AMR][1000 genomes]
rs12374432	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12374463	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12374470	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12374488	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12716453	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12716454	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12716456	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12716457	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12716460	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12716462	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13153245	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13153987	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13154249	0.86[AMR][1000 genomes]
rs13154650	0.82[ASN][1000 genomes]
rs13155452	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13156002	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13156202	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13156865	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13163610	0.86[AMR][1000 genomes]
rs13164315	0.82[ASN][1000 genomes]
rs13165147	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13165400	0.82[ASN][1000 genomes]
rs13170509	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13171131	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13173952	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13174700	0.86[AMR][1000 genomes]
rs13177800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13181660	0.86[AMR][1000 genomes]
rs13182631	0.82[ASN][1000 genomes]
rs13185608	0.86[AMR][1000 genomes]
rs13185660	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13186579	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13356088	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13357713	0.82[ASN][1000 genomes]
rs13361613	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1470150	0.82[ASN][1000 genomes]
rs17083455	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17312456	0.82[ASN][1000 genomes]
rs17314074	0.81[EUR][1000 genomes]
rs17314762	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17314797	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17314825	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17315943	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17323433	0.86[AMR][1000 genomes]
rs17372057	0.82[ASN][1000 genomes]
rs17372615	0.82[ASN][1000 genomes]
rs17372649	0.82[ASN][1000 genomes]
rs17372725	0.82[ASN][1000 genomes]
rs17374166	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17374627	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17376207	0.86[AMR][1000 genomes]
rs17376456	0.93[AMR][1000 genomes]
rs2085960	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2290937	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28412976	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28534784	0.82[ASN][1000 genomes]
rs28539612	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs28575883	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28610997	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28633397	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28637444	0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs28645862	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28705226	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34013242	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34068652	0.86[AMR][1000 genomes]
rs34138834	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34184666	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34384674	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34454564	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34592268	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34595581	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34621188	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34673483	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34756085	0.93[AMR][1000 genomes]
rs34854140	0.84[AMR][1000 genomes]
rs34891708	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34967135	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35075119	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35107028	0.82[ASN][1000 genomes]
rs35184505	0.93[AMR][1000 genomes]
rs35426871	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35496867	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35747258	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36026719	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs36042718	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36091096	0.90[AMR][1000 genomes]
rs3940842	0.93[AMR][1000 genomes]
rs4547912	0.93[AMR][1000 genomes]
rs55724660	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55832164	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55947981	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56046246	0.93[AMR][1000 genomes]
rs56108532	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56373208	0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs58734583	0.86[AMR][1000 genomes]
rs61132622	0.86[AMR][1000 genomes]
rs66564678	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66696214	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66978370	0.86[AMR][1000 genomes]
rs67066109	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs67150649	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67328989	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6859757	0.85[EUR][1000 genomes]
rs6865441	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6867042	0.93[AMR][1000 genomes]
rs6874766	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6877030	0.85[EUR][1000 genomes]
rs6881815	0.85[ASN][1000 genomes]
rs6892055	0.88[ASN][1000 genomes]
rs6898842	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71641007	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72786647	0.82[ASN][1000 genomes]
rs72786702	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72788365	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7701011	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7701314	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7701974	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7702521	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7715562	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7718842	0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7728736	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7729807	0.85[ASN][1000 genomes]
rs7734897	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7736620	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9314092	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9314093	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9314095	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9314096	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9314099	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9314100	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9314102	0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9885329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9968691	0.86[AMR][1000 genomes]
rs9968749	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv882384	chr5:93136661-93380123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93297400-93349600	Weak transcription	Aorta	Aorta
2	chr5:93314400-93336800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr5:93314600-93337200	Weak transcription	Primary B cells from peripheral blood	blood
4	chr5:93318600-93331400	Weak transcription	Primary T cells from cord blood	blood
5	chr5:93325400-93337200	Weak transcription	Primary B cells from cord blood	blood
6	chr5:93326800-93335200	Weak transcription	Ovary	ovary
7	chr5:93327000-93394600	Weak transcription	Small Intestine	intestine
8	chr5:93327600-93337600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:93329200-93357000	Weak transcription	HSMM	muscle
10	chr5:93329800-93331600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:93329800-93331600	Enhancers	NHDF-Ad	bronchial
12	chr5:93330000-93331800	Enhancers	Dnd41	blood
13	chr5:93330200-93331800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:93330800-93331400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr5:93330800-93331400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:93330800-93331400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr5:93330800-93331400	Enhancers	GM12878-XiMat	blood
18	chr5:93330800-93331400	Enhancers	NHLF	lung
19	chr5:93330800-93331400	Enhancers	Osteobl	bone
20	chr5:93330800-93331600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr5:93330800-93331600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr5:93330800-93331600	Enhancers	Muscle Satellite Cultured Cells	--
23	chr5:93330800-93331600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr5:93331000-93331400	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr5:93331000-93331600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr5:93331000-93331600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr5:93331000-93331600	Enhancers	Hela-S3	cervix
28	chr5:93331000-93353000	Weak transcription	Fetal Thymus	thymus
29	chr5:93331200-93331400	Enhancers	Colon Smooth Muscle	Colon
30	chr5:93331200-93333400	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr5:93331200-93336400	Weak transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links