Variant report

Variant	rs13186579
Chromosome Location	chr5:93306939-93306940
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 143 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:141)

rs_ID	r²[population]
rs10035340	0.81[AMR][1000 genomes]
rs10036829	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10040648	0.81[AMR][1000 genomes]
rs10044139	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10050465	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10052662	0.89[EUR][1000 genomes]
rs10053405	0.89[EUR][1000 genomes]
rs10054790	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10054903	0.89[EUR][1000 genomes]
rs10055340	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10055741	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10056879	0.89[EUR][1000 genomes]
rs10057130	0.89[EUR][1000 genomes]
rs10057605	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10057814	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10058331	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10060160	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10061080	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10061099	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10062711	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10063612	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10064368	0.89[EUR][1000 genomes]
rs10064520	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10065056	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10066791	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10067259	0.92[EUR][1000 genomes]
rs10072232	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10072592	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10076052	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10076192	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10078194	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10078941	0.89[EUR][1000 genomes]
rs10079708	0.87[EUR][1000 genomes]
rs10214278	0.89[EUR][1000 genomes]
rs10440717	0.82[EUR][1000 genomes]
rs10476522	0.91[EUR][1000 genomes]
rs10476590	0.89[EUR][1000 genomes]
rs10476591	0.85[EUR][1000 genomes]
rs10476596	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10476597	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10476598	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10476599	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10476601	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10476602	0.82[EUR][1000 genomes]
rs10514380	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10514382	0.84[AMR][1000 genomes]
rs12109629	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12152763	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12153501	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12153506	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12153788	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12187701	0.84[AMR][1000 genomes]
rs12188163	0.89[EUR][1000 genomes]
rs12188453	0.84[AMR][1000 genomes]
rs12374463	0.81[AMR][1000 genomes]
rs12374470	0.81[AMR][1000 genomes]
rs12374488	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12716453	0.89[EUR][1000 genomes]
rs12716454	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12716456	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12716457	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12716460	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12716462	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs13153245	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13156865	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13165147	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13169675	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13170509	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13171131	0.88[EUR][1000 genomes]
rs13173952	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13177800	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13185660	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13356088	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13361613	0.89[EUR][1000 genomes]
rs17083455	0.82[EUR][1000 genomes]
rs17314762	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs17314797	0.89[EUR][1000 genomes]
rs17314825	0.89[EUR][1000 genomes]
rs17315943	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17374166	0.89[EUR][1000 genomes]
rs17374627	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17376456	0.84[AMR][1000 genomes]
rs2085960	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2290937	0.88[EUR][1000 genomes]
rs28412976	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs28575883	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28610997	0.85[EUR][1000 genomes]
rs28633397	0.82[EUR][1000 genomes]
rs28637444	0.84[AMR][1000 genomes]
rs28645862	0.87[EUR][1000 genomes]
rs28705226	0.89[EUR][1000 genomes]
rs34138834	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34184666	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34454564	0.88[EUR][1000 genomes]
rs34592268	0.89[EUR][1000 genomes]
rs34595581	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34621188	0.89[EUR][1000 genomes]
rs34673483	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34756085	0.84[AMR][1000 genomes]
rs34967135	0.88[EUR][1000 genomes]
rs35075119	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35184505	0.84[AMR][1000 genomes]
rs35426871	0.92[EUR][1000 genomes]
rs35496867	0.88[EUR][1000 genomes]
rs35747258	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36091096	0.81[AMR][1000 genomes]
rs3940842	0.84[AMR][1000 genomes]
rs4547912	0.84[AMR][1000 genomes]
rs55724660	0.89[EUR][1000 genomes]
rs55832164	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55947981	0.89[EUR][1000 genomes]
rs56046246	0.84[AMR][1000 genomes]
rs56108532	0.89[EUR][1000 genomes]
rs56373208	0.84[AMR][1000 genomes]
rs66696214	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs67066109	0.81[AMR][1000 genomes]
rs67150649	0.92[EUR][1000 genomes]
rs67328989	0.90[EUR][1000 genomes]
rs6865441	0.91[EUR][1000 genomes]
rs6867042	0.84[AMR][1000 genomes]
rs6874766	0.86[EUR][1000 genomes]
rs6898842	0.86[EUR][1000 genomes]
rs71641007	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72786702	0.89[EUR][1000 genomes]
rs72788365	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7701011	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7701314	0.89[EUR][1000 genomes]
rs7701974	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7702521	0.81[AMR][1000 genomes]
rs7715562	0.88[EUR][1000 genomes]
rs7718842	0.87[AMR][1000 genomes]
rs7728736	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7734897	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7736620	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9314092	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9314093	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9314095	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9314099	0.81[EUR][1000 genomes]
rs9314100	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9314102	0.84[AMR][1000 genomes]
rs9885329	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv882384	chr5:93136661-93380123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93194200-93307600	Weak transcription	Left Ventricle	heart
2	chr5:93263200-93326400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:93282200-93309600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr5:93282800-93312000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr5:93287000-93307600	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr5:93287800-93309400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr5:93289000-93311200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr5:93290800-93307600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr5:93290800-93307600	Weak transcription	Spleen	Spleen
10	chr5:93290800-93309200	Weak transcription	Dnd41	blood
11	chr5:93290800-93309400	Weak transcription	Primary T cells from cord blood	blood
12	chr5:93291000-93307000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr5:93292000-93307800	Weak transcription	Primary B cells from peripheral blood	blood
14	chr5:93292000-93309400	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr5:93292600-93311800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr5:93297400-93349600	Weak transcription	Aorta	Aorta
17	chr5:93299400-93309600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr5:93299800-93307000	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr5:93300200-93312000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr5:93303200-93307600	Weak transcription	Fetal Stomach	stomach
21	chr5:93303200-93311400	Weak transcription	Primary B cells from cord blood	blood

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