Variant report

Variant	rs17372725
Chromosome Location	chr5:93135588-93135589
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:93133420..93135858-chr5:93140140..93142338,2	MCF-7	breast:

Extended variants
information (count: 183 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:180)

rs_ID	r²[population]
rs10036024	1.00[CEU][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10036829	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10036891	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10038424	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10038828	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10038831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10041792	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10045836	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10050364	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10050465	0.85[ASN][1000 genomes]
rs10051878	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10052662	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10053405	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10054790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10054903	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10055340	0.84[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.88[ASN][1000 genomes]
rs10055741	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10056879	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10057130	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10057664	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10058331	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10060331	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10061377	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10062711	0.85[ASN][1000 genomes]
rs10064158	0.85[ASN][1000 genomes]
rs10064368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10066431	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10066791	0.85[ASN][1000 genomes]
rs10067259	0.91[ASN][1000 genomes]
rs10067541	0.88[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10067754	0.85[ASN][1000 genomes]
rs10070350	0.91[ASN][1000 genomes]
rs10071040	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10071805	0.80[ASN][1000 genomes]
rs10075217	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10076052	0.88[ASN][1000 genomes]
rs10076192	0.85[ASN][1000 genomes]
rs10076965	0.85[ASN][1000 genomes]
rs10078194	0.82[ASN][1000 genomes]
rs10078941	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10079708	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10214278	1.00[CEU][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes]
rs1026279	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1031424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1038686	0.80[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1046217	0.86[JPT][hapmap]
rs10476520	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10476522	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10476588	0.97[ASN][1000 genomes]
rs10476590	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10476591	0.86[CEU][hapmap]
rs10476597	0.82[ASN][1000 genomes]
rs10476598	0.82[ASN][1000 genomes]
rs10514376	0.87[CHD][hapmap];0.86[JPT][hapmap]
rs11135397	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12054831	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12109629	0.82[ASN][1000 genomes]
rs12153021	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12153501	0.82[ASN][1000 genomes]
rs12153506	0.82[ASN][1000 genomes]
rs12188163	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12332731	0.85[ASN][1000 genomes]
rs12653528	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12716453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12716454	0.93[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13153245	0.82[ASN][1000 genomes]
rs13153987	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13154000	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13154650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13155452	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13156202	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13161885	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13164315	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13165400	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13169675	0.82[ASN][1000 genomes]
rs13171131	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13173952	0.85[ASN][1000 genomes]
rs13177800	0.88[ASN][1000 genomes]
rs13178857	0.83[ASN][1000 genomes]
rs13182631	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13185660	0.85[ASN][1000 genomes]
rs13357713	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13361613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1349711	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1453003	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1470150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs167570	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17083278	0.87[CHD][hapmap];0.86[JPT][hapmap]
rs17083297	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17083377	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17312456	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17314074	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17314762	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17314797	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17314825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17372057	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17372615	1.00[ASW][hapmap];0.86[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17372649	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17374166	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17374627	0.93[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs1901736	0.88[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1982439	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2045019	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2045020	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2045021	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2084916	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2290937	0.82[ASN][1000 genomes]
rs28412976	0.97[ASN][1000 genomes]
rs28418572	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28526002	0.85[ASN][1000 genomes]
rs28534784	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28575883	0.82[ASN][1000 genomes]
rs28594545	0.85[ASN][1000 genomes]
rs28610997	0.97[ASN][1000 genomes]
rs28645862	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28705226	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2924374	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs34454564	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34592268	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34595581	0.82[ASN][1000 genomes]
rs34621188	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34891708	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34967135	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35107028	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35372313	0.85[ASN][1000 genomes]
rs35426871	0.94[ASN][1000 genomes]
rs35496867	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35747258	0.88[ASN][1000 genomes]
rs35791029	0.85[ASN][1000 genomes]
rs35878747	0.85[ASN][1000 genomes]
rs36042718	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55724660	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55947981	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56108532	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6556829	0.86[JPT][hapmap]
rs6556834	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6556838	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6556839	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs66564678	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67150649	0.91[ASN][1000 genomes]
rs67328989	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67914792	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs68122392	0.85[ASN][1000 genomes]
rs6859757	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6865441	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6868067	0.80[ASN][1000 genomes]
rs6874766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6877030	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6877616	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6879620	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6881815	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6884138	0.87[CHD][hapmap];0.86[JPT][hapmap]
rs6890998	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6892055	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6895356	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6898507	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6898842	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72786647	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72786662	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72786702	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7701011	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.88[ASN][1000 genomes]
rs7701114	0.85[ASN][1000 genomes]
rs7701314	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7701974	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7702348	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7702649	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7712388	0.86[JPT][hapmap]
rs7713956	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7715562	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7717718	0.80[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7721168	0.87[CHD][hapmap];0.86[JPT][hapmap]
rs7729807	0.91[ASN][1000 genomes]
rs7734897	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7736620	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.88[ASN][1000 genomes]
rs7736624	0.87[CHD][hapmap];0.86[JPT][hapmap]
rs7736892	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs896729	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9314086	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9314092	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.82[ASN][1000 genomes]
rs9314093	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv830405	chr5:93086825-93258518	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv1796354	chr5:93120618-93138786	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17372725	MAGOHB	trans	cerebellum	SCAN

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93100600-93136200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:93101200-93164200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr5:93101800-93136600	Weak transcription	HSMMtube	muscle
4	chr5:93108800-93137400	Weak transcription	Right Ventricle	heart
5	chr5:93109000-93136800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr5:93109200-93159600	Weak transcription	Thymus	Thymus
7	chr5:93109400-93136800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr5:93110200-93136600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:93111400-93136000	Weak transcription	Fetal Brain Male	brain
10	chr5:93111400-93142200	Weak transcription	Dnd41	blood
11	chr5:93111400-93159000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr5:93111600-93179800	Weak transcription	Left Ventricle	heart
13	chr5:93111800-93136800	Weak transcription	Liver	Liver
14	chr5:93111800-93136800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr5:93114400-93136200	Weak transcription	Brain Germinal Matrix	brain
16	chr5:93118200-93137400	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr5:93120200-93161800	Weak transcription	Primary B cells from peripheral blood	blood
18	chr5:93125600-93136800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr5:93125600-93136800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr5:93126400-93136800	Weak transcription	Fetal Brain Female	brain
21	chr5:93126600-93136800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr5:93126800-93136800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr5:93127600-93136600	Weak transcription	Primary hematopoietic stem cells	blood
24	chr5:93127800-93136800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr5:93127800-93136800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr5:93128000-93136600	Weak transcription	Fetal Lung	lung
27	chr5:93128000-93136800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr5:93129800-93136800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr5:93131000-93136000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr5:93131000-93136600	Weak transcription	A549	lung
31	chr5:93131000-93136800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr5:93131000-93136800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr5:93131000-93136800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr5:93131000-93136800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr5:93131000-93136800	Weak transcription	Psoas Muscle	Psoas
36	chr5:93131000-93137400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr5:93131000-93143800	Weak transcription	Fetal Intestine Large	intestine
38	chr5:93131200-93136800	Weak transcription	Fetal Intestine Small	intestine
39	chr5:93131200-93136800	Weak transcription	Fetal Stomach	stomach
40	chr5:93131200-93136800	Weak transcription	Lung	lung
41	chr5:93131200-93136800	Weak transcription	Pancreas	Pancrea
42	chr5:93131200-93137400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr5:93131200-93139200	Weak transcription	Gastric	stomach
44	chr5:93131200-93148800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr5:93131200-93179200	Weak transcription	Ovary	ovary
46	chr5:93131400-93136200	Weak transcription	Hela-S3	cervix
47	chr5:93131400-93136600	Weak transcription	Adipose Nuclei	Adipose
48	chr5:93131400-93141200	Weak transcription	Primary T cells from cord blood	blood
49	chr5:93131400-93148600	Weak transcription	Primary B cells from cord blood	blood
50	chr5:93132600-93136800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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