Variant report

Variant	rs17083337
Chromosome Location	chr5:93118265-93118266
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10050364	0.83[YRI][hapmap]
rs10062291	1.00[ASN][1000 genomes]
rs10066088	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10066323	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10070314	1.00[ASN][1000 genomes]
rs10076457	1.00[ASN][1000 genomes]
rs1026280	1.00[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1026281	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1031422	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10476520	0.83[YRI][hapmap]
rs10476595	1.00[ASN][1000 genomes]
rs10514378	1.00[CEU][hapmap];1.00[GIH][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10866759	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11135399	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1372037	1.00[CEU][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1453002	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083315	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083377	0.87[MKK][hapmap]
rs1869277	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2119449	1.00[ASW][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2344918	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2345364	1.00[ASN][1000 genomes]
rs2924374	0.87[MKK][hapmap]
rs2924375	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2924377	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[LWK][hapmap];0.88[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35147150	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4242233	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4380636	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4607342	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869203	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869204	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869205	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869208	1.00[ASN][1000 genomes]
rs57046989	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57881693	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6556834	0.83[YRI][hapmap]
rs6556835	0.82[EUR][1000 genomes]
rs6868462	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6868481	1.00[ASN][1000 genomes]
rs6873825	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6874223	1.00[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6879620	0.82[YRI][hapmap]
rs6881815	0.83[YRI][hapmap]
rs6893023	1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];0.89[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6898507	0.83[YRI][hapmap]
rs73137117	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73137123	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73137126	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73137133	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73137142	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7702649	0.83[YRI][hapmap]
rs7710880	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7715555	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7723944	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7729237	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7730993	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9314089	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9314090	1.00[CEU][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9314091	1.00[MEX][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv830405	chr5:93086825-93258518	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93077200-93130400	Weak transcription	Spleen	Spleen
2	chr5:93087800-93124000	Weak transcription	Pancreas	Pancrea
3	chr5:93100600-93136200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:93101200-93164200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:93101800-93136600	Weak transcription	HSMMtube	muscle
6	chr5:93106800-93125400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr5:93106800-93132400	Weak transcription	Placenta	Placenta
8	chr5:93107000-93124800	Weak transcription	HSMM	muscle
9	chr5:93107400-93120600	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr5:93108200-93118800	Weak transcription	Osteobl	bone
11	chr5:93108600-93124800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:93108600-93130600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr5:93108800-93121600	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr5:93108800-93127000	Weak transcription	Fetal Stomach	stomach
15	chr5:93108800-93130400	Weak transcription	Lung	lung
16	chr5:93108800-93137400	Weak transcription	Right Ventricle	heart
17	chr5:93109000-93136800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr5:93109200-93159600	Weak transcription	Thymus	Thymus
19	chr5:93109400-93124800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr5:93109400-93136800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr5:93110000-93130600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr5:93110200-93136600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr5:93110600-93125400	Weak transcription	Fetal Lung	lung
24	chr5:93111400-93121000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr5:93111400-93121800	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr5:93111400-93130200	Weak transcription	Fetal Muscle Trunk	muscle
27	chr5:93111400-93130400	Weak transcription	Aorta	Aorta
28	chr5:93111400-93130400	Weak transcription	Fetal Intestine Large	intestine
29	chr5:93111400-93130400	Weak transcription	Fetal Muscle Leg	muscle
30	chr5:93111400-93136000	Weak transcription	Fetal Brain Male	brain
31	chr5:93111400-93142200	Weak transcription	Dnd41	blood
32	chr5:93111400-93159000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr5:93111600-93118800	Weak transcription	Colon Smooth Muscle	Colon
34	chr5:93111600-93119200	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr5:93111600-93124800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr5:93111600-93124800	Weak transcription	Fetal Kidney	kidney
37	chr5:93111600-93179800	Weak transcription	Left Ventricle	heart
38	chr5:93111800-93118600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr5:93111800-93129400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr5:93111800-93130400	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr5:93111800-93136800	Weak transcription	Liver	Liver
42	chr5:93111800-93136800	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr5:93112000-93119400	Weak transcription	Primary hematopoietic stem cells	blood
44	chr5:93112000-93129800	Weak transcription	Adipose Nuclei	Adipose
45	chr5:93112000-93130400	Weak transcription	Ovary	ovary
46	chr5:93112200-93130400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr5:93113000-93119200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr5:93113800-93125600	Weak transcription	Brain Angular Gyrus	brain
49	chr5:93114400-93123000	Weak transcription	Brain Hippocampus Middle	brain
50	chr5:93114400-93129600	Weak transcription	Brain Anterior Caudate	brain

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