Variant report

Variant	rs7715555
Chromosome Location	chr5:93136661-93136662
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:92918605..92921388-chr5:93136060..93138274,2	MCF-7	breast:
2	chr5:92932477..92933445-chr5:93135854..93136694,2	MCF-7	breast:
3	chr5:93127282..93128006-chr5:93136216..93137176,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175745	Chromatin interaction
ENSG00000237187	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10060331	0.80[YRI][hapmap]
rs10062291	1.00[ASN][1000 genomes]
rs10066088	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10066323	1.00[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10070314	1.00[ASN][1000 genomes]
rs10076457	1.00[ASN][1000 genomes]
rs1026280	1.00[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1026281	1.00[CEU][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1031422	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10476595	1.00[ASN][1000 genomes]
rs10514378	1.00[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10866759	1.00[CEU][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11135399	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1372037	1.00[CEU][hapmap];0.84[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1453002	1.00[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1453003	0.88[YRI][hapmap]
rs17083315	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083337	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083377	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs1869277	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1982439	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs2119449	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2344918	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2345364	1.00[ASN][1000 genomes]
rs2924374	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs2924375	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2924377	1.00[CEU][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35147150	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4242233	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4380636	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4607342	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869203	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869204	1.00[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869205	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869208	1.00[ASN][1000 genomes]
rs57046989	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57881693	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6556835	0.82[EUR][1000 genomes]
rs6868462	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6868481	1.00[ASN][1000 genomes]
rs6873825	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6874223	1.00[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6893023	1.00[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73137117	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73137123	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73137126	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73137133	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73137142	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7710880	1.00[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7713956	0.88[YRI][hapmap]
rs7723944	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7729237	1.00[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7730993	1.00[CEU][hapmap];0.83[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9314089	1.00[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9314090	1.00[CEU][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9314091	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv830405	chr5:93086825-93258518	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv1796354	chr5:93120618-93138786	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882384	chr5:93136661-93380123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93101200-93164200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr5:93108800-93137400	Weak transcription	Right Ventricle	heart
3	chr5:93109000-93136800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr5:93109200-93159600	Weak transcription	Thymus	Thymus
5	chr5:93109400-93136800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr5:93111400-93142200	Weak transcription	Dnd41	blood
7	chr5:93111400-93159000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr5:93111600-93179800	Weak transcription	Left Ventricle	heart
9	chr5:93111800-93136800	Weak transcription	Liver	Liver
10	chr5:93111800-93136800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr5:93118200-93137400	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr5:93120200-93161800	Weak transcription	Primary B cells from peripheral blood	blood
13	chr5:93125600-93136800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:93125600-93136800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr5:93126400-93136800	Weak transcription	Fetal Brain Female	brain
16	chr5:93126600-93136800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr5:93126800-93136800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr5:93127800-93136800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr5:93127800-93136800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr5:93128000-93136800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr5:93129800-93136800	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr5:93131000-93136800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr5:93131000-93136800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr5:93131000-93136800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr5:93131000-93136800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr5:93131000-93136800	Weak transcription	Psoas Muscle	Psoas
27	chr5:93131000-93137400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr5:93131000-93143800	Weak transcription	Fetal Intestine Large	intestine
29	chr5:93131200-93136800	Weak transcription	Fetal Intestine Small	intestine
30	chr5:93131200-93136800	Weak transcription	Fetal Stomach	stomach
31	chr5:93131200-93136800	Weak transcription	Lung	lung
32	chr5:93131200-93136800	Weak transcription	Pancreas	Pancrea
33	chr5:93131200-93137400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr5:93131200-93139200	Weak transcription	Gastric	stomach
35	chr5:93131200-93148800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr5:93131200-93179200	Weak transcription	Ovary	ovary
37	chr5:93131400-93141200	Weak transcription	Primary T cells from cord blood	blood
38	chr5:93131400-93148600	Weak transcription	Primary B cells from cord blood	blood
39	chr5:93132600-93136800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr5:93132600-93157800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr5:93132800-93140400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr5:93136000-93137400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr5:93136200-93136800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr5:93136200-93137000	Enhancers	Brain Germinal Matrix	brain
45	chr5:93136200-93137600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr5:93136200-93137600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr5:93136200-93137800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr5:93136200-93137800	Enhancers	Hela-S3	cervix
49	chr5:93136400-93137000	Enhancers	iPS-15b Cell Line	embryonic stem cell
50	chr5:93136400-93137200	Enhancers	HUES48 Cell Line	embryonic stem cell

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