Variant report

Variant	rs9314089
Chromosome Location	chr5:93138165-93138166
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:92918605..92921388-chr5:93136060..93138274,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000237187	Chromatin interaction
ENSG00000175745	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10062291	1.00[ASN][1000 genomes]
rs10066088	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10066323	1.00[CEU][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10070314	1.00[ASN][1000 genomes]
rs10076457	1.00[ASN][1000 genomes]
rs1026280	1.00[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1026281	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1031422	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10476595	1.00[ASN][1000 genomes]
rs10514378	1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10866759	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11135399	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1372037	1.00[CEU][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1453002	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1453003	0.84[YRI][hapmap]
rs17083315	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083337	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083377	0.83[LWK][hapmap];0.89[MKK][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs1869277	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1982439	0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs2045020	0.84[LWK][hapmap]
rs2119449	1.00[ASW][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2344918	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2345364	1.00[ASN][1000 genomes]
rs2924374	0.83[LWK][hapmap];0.89[MKK][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs2924375	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2924377	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35147150	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4242233	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4380636	1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4607342	1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869203	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869204	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869205	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869208	1.00[ASN][1000 genomes]
rs57046989	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57881693	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6556835	0.82[EUR][1000 genomes]
rs6556838	0.82[LWK][hapmap]
rs6556839	0.84[LWK][hapmap]
rs6868462	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6868481	1.00[ASN][1000 genomes]
rs6873825	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6874223	1.00[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6893023	1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];0.89[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73137117	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73137123	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73137126	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73137133	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73137142	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7710880	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7713956	0.84[YRI][hapmap]
rs7715555	1.00[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7723944	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7729237	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7730993	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9314090	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9314091	1.00[MEX][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv830405	chr5:93086825-93258518	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv1796354	chr5:93120618-93138786	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882384	chr5:93136661-93380123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93101200-93164200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr5:93109200-93159600	Weak transcription	Thymus	Thymus
3	chr5:93111400-93142200	Weak transcription	Dnd41	blood
4	chr5:93111400-93159000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr5:93111600-93179800	Weak transcription	Left Ventricle	heart
6	chr5:93120200-93161800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr5:93131000-93143800	Weak transcription	Fetal Intestine Large	intestine
8	chr5:93131200-93139200	Weak transcription	Gastric	stomach
9	chr5:93131200-93148800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr5:93131200-93179200	Weak transcription	Ovary	ovary
11	chr5:93131400-93141200	Weak transcription	Primary T cells from cord blood	blood
12	chr5:93131400-93148600	Weak transcription	Primary B cells from cord blood	blood
13	chr5:93132600-93157800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr5:93132800-93140400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:93137000-93165400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr5:93137000-93168400	Weak transcription	Pancreas	Pancrea
17	chr5:93137000-93168600	Weak transcription	Fetal Stomach	stomach
18	chr5:93137200-93140400	Weak transcription	Liver	Liver
19	chr5:93137200-93141200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr5:93137200-93160600	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr5:93137200-93160800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr5:93137200-93166800	Weak transcription	HSMM	muscle
23	chr5:93137600-93140000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr5:93137600-93140600	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr5:93137600-93141600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr5:93137600-93141600	Weak transcription	Fetal Kidney	kidney
27	chr5:93137600-93180400	Weak transcription	Fetal Lung	lung

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