Variant report

Variant	rs35147150
Chromosome Location	chr5:93116423-93116424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10066088	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10066323	0.94[EUR][1000 genomes]
rs1026280	0.96[EUR][1000 genomes]
rs1026281	0.90[EUR][1000 genomes]
rs1031422	1.00[EUR][1000 genomes]
rs10514378	0.94[EUR][1000 genomes]
rs10866759	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11135399	0.90[EUR][1000 genomes]
rs1372037	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1453002	0.88[EUR][1000 genomes]
rs17083315	1.00[EUR][1000 genomes]
rs17083337	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1869277	0.90[EUR][1000 genomes]
rs2119449	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2344918	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2924375	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2924377	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4242233	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4380636	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4607342	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4869203	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4869204	0.96[EUR][1000 genomes]
rs4869205	0.92[EUR][1000 genomes]
rs57046989	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57881693	1.00[EUR][1000 genomes]
rs6556835	0.82[EUR][1000 genomes]
rs6868462	0.86[EUR][1000 genomes]
rs6873825	0.82[EUR][1000 genomes]
rs6874223	0.94[EUR][1000 genomes]
rs6893023	0.96[EUR][1000 genomes]
rs73137117	1.00[EUR][1000 genomes]
rs73137123	1.00[EUR][1000 genomes]
rs73137126	1.00[EUR][1000 genomes]
rs73137133	1.00[EUR][1000 genomes]
rs73137142	1.00[EUR][1000 genomes]
rs7710880	0.96[EUR][1000 genomes]
rs7715555	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7723944	1.00[EUR][1000 genomes]
rs7729237	0.96[EUR][1000 genomes]
rs7730993	1.00[EUR][1000 genomes]
rs9314089	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9314090	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9314091	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv830405	chr5:93086825-93258518	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93077200-93130400	Weak transcription	Spleen	Spleen
2	chr5:93087800-93124000	Weak transcription	Pancreas	Pancrea
3	chr5:93100600-93136200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:93101200-93164200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:93101800-93136600	Weak transcription	HSMMtube	muscle
6	chr5:93106800-93125400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr5:93106800-93132400	Weak transcription	Placenta	Placenta
8	chr5:93107000-93124800	Weak transcription	HSMM	muscle
9	chr5:93107400-93120600	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr5:93108200-93118200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr5:93108200-93118800	Weak transcription	Osteobl	bone
12	chr5:93108600-93124800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:93108600-93130600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr5:93108800-93121600	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr5:93108800-93127000	Weak transcription	Fetal Stomach	stomach
16	chr5:93108800-93130400	Weak transcription	Lung	lung
17	chr5:93108800-93137400	Weak transcription	Right Ventricle	heart
18	chr5:93109000-93136800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr5:93109200-93117800	Weak transcription	Esophagus	oesophagus
20	chr5:93109200-93159600	Weak transcription	Thymus	Thymus
21	chr5:93109400-93117200	Weak transcription	Brain Substantia Nigra	brain
22	chr5:93109400-93124800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr5:93109400-93136800	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr5:93110000-93130600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr5:93110200-93136600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr5:93110600-93125400	Weak transcription	Fetal Lung	lung
27	chr5:93111400-93121000	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr5:93111400-93121800	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr5:93111400-93130200	Weak transcription	Fetal Muscle Trunk	muscle
30	chr5:93111400-93130400	Weak transcription	Aorta	Aorta
31	chr5:93111400-93130400	Weak transcription	Fetal Intestine Large	intestine
32	chr5:93111400-93130400	Weak transcription	Fetal Muscle Leg	muscle
33	chr5:93111400-93136000	Weak transcription	Fetal Brain Male	brain
34	chr5:93111400-93142200	Weak transcription	Dnd41	blood
35	chr5:93111400-93159000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr5:93111600-93118200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr5:93111600-93118800	Weak transcription	Colon Smooth Muscle	Colon
38	chr5:93111600-93119200	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr5:93111600-93124800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr5:93111600-93124800	Weak transcription	Fetal Kidney	kidney
41	chr5:93111600-93179800	Weak transcription	Left Ventricle	heart
42	chr5:93111800-93118600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr5:93111800-93129400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr5:93111800-93130400	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr5:93111800-93136800	Weak transcription	Liver	Liver
46	chr5:93111800-93136800	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr5:93112000-93117200	Weak transcription	Primary B cells from cord blood	blood
48	chr5:93112000-93117200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr5:93112000-93117800	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr5:93112000-93119400	Weak transcription	Primary hematopoietic stem cells	blood

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