Variant report

Variant	rs2356371
Chromosome Location	chr8:64970534-64970535
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10504371	0.84[EUR][1000 genomes]
rs12549556	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12549559	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13255222	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13256546	0.84[EUR][1000 genomes]
rs13271553	0.89[ASN][1000 genomes]
rs13273490	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13280176	0.84[EUR][1000 genomes]
rs1444511	0.92[ASN][1000 genomes]
rs1550730	0.92[ASN][1000 genomes]
rs1838420	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1838421	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1838424	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2018264	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2083995	0.84[EUR][1000 genomes]
rs2099982	0.92[ASN][1000 genomes]
rs2883916	0.91[ASN][1000 genomes]
rs35496690	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3910845	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4027777	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4147346	0.92[ASN][1000 genomes]
rs4475525	0.84[ASN][1000 genomes]
rs6472131	0.92[ASN][1000 genomes]
rs6981673	0.81[EUR][1000 genomes]
rs6985609	0.89[ASN][1000 genomes]
rs6988220	0.89[ASN][1000 genomes]
rs6991156	0.83[AMR][1000 genomes]
rs7014553	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7017705	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7844737	0.89[ASN][1000 genomes]
rs874777	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs920875	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948343	chr8:64804219-65328394	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv890969	chr8:64807144-65047353	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64969800-64973200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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