Variant report
| Variant | rs4027777 |
|---|---|
| Chromosome Location | chr8:64970510-64970511 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs12549556 | 0.86[AMR][1000 genomes] |
| rs12549559 | 0.81[ASN][1000 genomes] |
| rs13255222 | 0.80[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs13273490 | 0.81[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1444511 | 0.81[ASN][1000 genomes] |
| rs1550730 | 0.81[ASN][1000 genomes] |
| rs1838420 | 0.81[AMR][1000 genomes] |
| rs1838421 | 0.81[AMR][1000 genomes] |
| rs1838424 | 0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2018264 | 0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2099982 | 0.81[ASN][1000 genomes] |
| rs2356371 | 0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs35496690 | 0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs3910845 | 0.83[AMR][1000 genomes] |
| rs4147346 | 0.81[ASN][1000 genomes] |
| rs6472131 | 0.81[ASN][1000 genomes] |
| rs7014553 | 0.82[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7017705 | 0.83[AMR][1000 genomes] |
| rs874777 | 0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs920875 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948343 | chr8:64804219-65328394 | Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv890969 | chr8:64807144-65047353 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:64969800-64973200 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
