Variant report

Variant	rs2357590
Chromosome Location	chr1:210612038-210612039
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr1:210611698-210614239	IMR90	lung:	n/a	n/a
2	MAX	chr1:210611980-210613201	A549	lung:	n/a	n/a
3	EP300	chr1:210612017-210613121	SK-N-SH	brain:	n/a	n/a
4	TCF12	chr1:210612003-210613218	SK-N-SH	brain:	n/a	n/a
5	EP300	chr1:210611954-210613174	A549	lung:	n/a	n/a
6	POLR2A	chr1:210611516-210614181	IMR90	lung:	n/a	n/a
7	GATA3	chr1:210612036-210613265	SK-N-SH	brain:	n/a	n/a
8	SP1	chr1:210612022-210613069	A549	lung:	n/a	n/a
9	GATA3	chr1:210612023-210613152	SK-N-SH	brain:	n/a	n/a
10	TCF12	chr1:210611942-210613155	A549	lung:	n/a	n/a
11	GATA3	chr1:210611948-210613213	A549	lung:	n/a	n/a
12	TEAD4	chr1:210612029-210613113	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
HHAT	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11809771	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11810188	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12025108	0.85[AFR][1000 genomes]
rs12119492	0.80[AFR][1000 genomes]
rs12408887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2003698	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2103692	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2206609	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34549224	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3765846	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4845015	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4845017	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4845028	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4845030	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4845031	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4845032	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56252446	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745472	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72745499	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs742562	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7527066	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7534912	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7534914	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs910030	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs910031	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs910032	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs926578	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756883	chr1:210579523-210620779	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	esv2758995	chr1:210579523-210620779	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv999294	chr1:210598729-210612528	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv515857	chr1:210604130-210613616	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv818811	chr1:210604130-210613616	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1001747	chr1:210604734-210615281	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv999833	chr1:210604734-210620211	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv441734	chr1:210604746-210612524	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv2421437	chr1:210604746-210613616	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv2764216	chr1:210604746-210615293	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210567400-210617200	Weak transcription	Left Ventricle	heart
2	chr1:210571400-210641000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr1:210592800-210625000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:210602400-210613600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:210608000-210612200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr1:210608200-210612200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr1:210608200-210612200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr1:210608200-210612800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr1:210609200-210619800	Weak transcription	Esophagus	oesophagus
10	chr1:210609800-210612800	Enhancers	HSMMtube	muscle
11	chr1:210610200-210613800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr1:210610600-210612400	Enhancers	HSMM	muscle
13	chr1:210610600-210612800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:210610600-210613000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr1:210610600-210614800	Enhancers	Fetal Muscle Leg	muscle
16	chr1:210610600-210615000	Enhancers	Osteobl	bone
17	chr1:210610800-210614800	Enhancers	NHDF-Ad	bronchial
18	chr1:210611200-210612400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr1:210611200-210612400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr1:210611200-210614800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr1:210611400-210613200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr1:210611400-210614600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr1:210611600-210613000	Enhancers	NH-A	brain
24	chr1:210611600-210613600	Enhancers	HUVEC	blood vessel
25	chr1:210611600-210613800	Enhancers	NHLF	lung
26	chr1:210611600-210618400	Weak transcription	Thymus	Thymus
27	chr1:210611600-210639600	Weak transcription	Aorta	Aorta
28	chr1:210611800-210614200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr1:210611800-210614200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr1:210611800-210614200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr1:210611800-210614600	Enhancers	A549	lung
32	chr1:210611800-210614600	Enhancers	HMEC	breast
33	chr1:210611800-210614800	Enhancers	NHEK	skin
34	chr1:210612000-210613800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr1:210612000-210615000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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