Variant report

Variant	rs3765846
Chromosome Location	chr1:210619089-210619090
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:210612929..210615850-chr1:210617890..210620157,2	K562	blood:
2	chr1:210618870..210621785-chr1:211306135..211307908,2	MCF-7	breast:
3	chr1:210617470..210620137-chr1:211308701..211310289,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000234233	Chromatin interaction
ENSG00000143473	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11809771	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11810188	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12408887	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17016247	0.81[CEU][hapmap]
rs2003698	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2103692	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2206609	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2357590	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34549224	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4845015	0.81[CEU][hapmap];0.82[CHB][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4845017	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4845028	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4845030	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4845031	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4845032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56252446	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745472	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72745499	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs742562	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7527066	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7534912	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7534914	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs910030	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs910031	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs910032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs926578	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756883	chr1:210579523-210620779	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	esv2758995	chr1:210579523-210620779	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv999833	chr1:210604734-210620211	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210571400-210641000	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr1:210592800-210625000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr1:210609200-210619800	Weak transcription	Esophagus	oesophagus
4	chr1:210611600-210639600	Weak transcription	Aorta	Aorta
5	chr1:210613600-210619600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr1:210613800-210619400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr1:210614200-210619200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:210614200-210619400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:210614600-210619400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr1:210614600-210619400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:210614600-210619400	Weak transcription	NH-A	brain
12	chr1:210614600-210619800	Weak transcription	A549	lung
13	chr1:210614600-210641200	Weak transcription	Gastric	stomach
14	chr1:210614800-210619800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:210614800-210623800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr1:210615000-210619600	Weak transcription	Osteobl	bone
17	chr1:210618000-210619400	Enhancers	HSMMtube	muscle
18	chr1:210618400-210619200	Enhancers	Liver	Liver
19	chr1:210618400-210620800	Enhancers	Thymus	Thymus
20	chr1:210618400-210621400	Genic enhancers	HSMM	muscle
21	chr1:210618600-210619200	Weak transcription	Placenta	Placenta
22	chr1:210618600-210619800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:210618800-210620000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr1:210618800-210620200	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr1:210618800-210620200	Enhancers	Fetal Muscle Leg	muscle
26	chr1:210618800-210620600	Enhancers	Muscle Satellite Cultured Cells	--
27	chr1:210619000-210619600	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr1:210619000-210619800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr1:210619000-210619800	Enhancers	Dnd41	blood
30	chr1:210619000-210620200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr1:210619000-210620200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr1:210619000-210620200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr1:210619000-210620200	Enhancers	Primary T cells from cord blood	blood
34	chr1:210619000-210620200	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr1:210619000-210620200	Enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr1:210619000-210620400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr1:210619000-210620400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr1:210619000-210620400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
39	chr1:210619000-210620400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr1:210619000-210620600	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr1:210619000-210620800	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr1:210619000-210621800	Enhancers	Fetal Thymus	thymus

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