Variant report

Variant	rs4845017
Chromosome Location	chr1:210590895-210590896
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:210590026..210592841-chr1:211432035..211434761,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117625	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11809771	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11810188	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12408887	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2003698	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2103692	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2206609	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2357590	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34549224	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3765846	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4845015	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4845028	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4845030	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4845031	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4845032	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56252446	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72745472	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745499	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs742562	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7527066	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7534912	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7534914	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs910030	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs910031	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs910032	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs926578	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756883	chr1:210579523-210620779	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	esv2758995	chr1:210579523-210620779	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210567400-210617200	Weak transcription	Left Ventricle	heart
2	chr1:210570200-210594000	Weak transcription	Fetal Lung	lung
3	chr1:210571200-210592400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:210571400-210591400	Weak transcription	Ovary	ovary
5	chr1:210571400-210641000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr1:210573600-210592400	Weak transcription	Fetal Intestine Small	intestine
7	chr1:210573800-210592200	Weak transcription	Primary T cells from cord blood	blood
8	chr1:210573800-210594400	Weak transcription	Spleen	Spleen
9	chr1:210574400-210592200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:210574400-210594400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr1:210574400-210595200	Weak transcription	Right Ventricle	heart
12	chr1:210577400-210591600	Weak transcription	Thymus	Thymus
13	chr1:210581200-210592400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr1:210583400-210592400	Weak transcription	Liver	Liver
15	chr1:210584400-210591600	Weak transcription	Esophagus	oesophagus
16	chr1:210585200-210593600	Weak transcription	Fetal Stomach	stomach
17	chr1:210586400-210610800	Weak transcription	Aorta	Aorta
18	chr1:210587600-210591400	Enhancers	HSMMtube	muscle
19	chr1:210589200-210591000	Enhancers	Fetal Brain Male	brain
20	chr1:210589400-210592800	Enhancers	HSMM	muscle
21	chr1:210589600-210591000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr1:210589600-210592600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr1:210590000-210592400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr1:210590200-210592800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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