Variant report

Variant	rs4845015
Chromosome Location	chr1:210587818-210587819
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:210546163..210547950-chr1:210586402..210589713,3	K562	blood:
2	chr1:210545710..210547947-chr1:210586975..210589311,2	MCF-7	breast:
3	chr1:210545093..210547950-chr1:210587294..210588958,2	K562	blood:

Variant related genes	Relation type
ENSG00000200972	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11809771	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11810188	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12408887	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17188288	1.00[YRI][hapmap]
rs17260473	1.00[YRI][hapmap]
rs2003698	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2103692	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2206609	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2357590	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34549224	1.00[ASW][hapmap];0.81[CEU][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap];0.96[GIH][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3765846	0.81[CEU][hapmap];0.82[CHB][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4537555	1.00[YRI][hapmap]
rs4845017	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4845028	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4845030	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4845031	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4845032	0.81[CEU][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56252446	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72745472	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745499	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs742562	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7527066	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7534912	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7534914	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs910030	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs910031	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs910032	1.00[ASW][hapmap];0.81[CEU][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.87[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs926578	0.81[CEU][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756883	chr1:210579523-210620779	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	esv2758995	chr1:210579523-210620779	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210567400-210617200	Weak transcription	Left Ventricle	heart
2	chr1:210570200-210594000	Weak transcription	Fetal Lung	lung
3	chr1:210571200-210592400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:210571400-210591400	Weak transcription	Ovary	ovary
5	chr1:210571400-210641000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr1:210573600-210592400	Weak transcription	Fetal Intestine Small	intestine
7	chr1:210573800-210592200	Weak transcription	Primary T cells from cord blood	blood
8	chr1:210573800-210594400	Weak transcription	Spleen	Spleen
9	chr1:210574400-210592200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:210574400-210594400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr1:210574400-210595200	Weak transcription	Right Ventricle	heart
12	chr1:210577400-210591600	Weak transcription	Thymus	Thymus
13	chr1:210581200-210590000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr1:210581200-210592400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr1:210583400-210592400	Weak transcription	Liver	Liver
16	chr1:210584400-210591600	Weak transcription	Esophagus	oesophagus
17	chr1:210585200-210593600	Weak transcription	Fetal Stomach	stomach
18	chr1:210586400-210610800	Weak transcription	Aorta	Aorta
19	chr1:210587400-210588800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr1:210587600-210591400	Enhancers	HSMMtube	muscle
21	chr1:210587800-210588000	Enhancers	Fetal Brain Male	brain
22	chr1:210587800-210588400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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