Variant report

Variant	rs2364293
Chromosome Location	chr3:60764828-60764829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11130781	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11130782	0.82[ASN][1000 genomes]
rs11710207	0.82[ASN][1000 genomes]
rs12185984	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13059280	0.82[ASN][1000 genomes]
rs13065371	0.82[ASN][1000 genomes]
rs13067083	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13098348	0.82[ASN][1000 genomes]
rs13098466	0.82[ASN][1000 genomes]
rs13098545	0.82[ASN][1000 genomes]
rs13099811	0.82[ASN][1000 genomes]
rs1569346	0.90[ASN][1000 genomes]
rs2064012	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2142294	0.88[ASN][1000 genomes]
rs2205343	0.82[ASN][1000 genomes]
rs2205344	0.82[ASN][1000 genomes]
rs4974230	0.81[ASN][1000 genomes]
rs57203484	0.82[ASN][1000 genomes]
rs57595293	0.82[ASN][1000 genomes]
rs60858106	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6771383	0.90[ASN][1000 genomes]
rs6786213	0.84[EUR][1000 genomes]
rs6787897	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7429680	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs926139	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9823013	0.80[ASN][1000 genomes]
rs9840977	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9842407	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9847131	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9878766	0.80[ASN][1000 genomes]
rs9881274	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9882068	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60761800-60765400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:60761800-60766200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:60762000-60765600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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