Variant report

Variant	rs60858106
Chromosome Location	chr3:60771675-60771676
allele	-/AG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11130781	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12185984	0.88[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1569346	0.84[ASN][1000 genomes]
rs2064012	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2142294	0.84[ASN][1000 genomes]
rs2364293	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4974230	0.80[ASN][1000 genomes]
rs62249311	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6771383	0.84[ASN][1000 genomes]
rs6786213	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6787897	0.86[ASN][1000 genomes]
rs926139	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9823013	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9842407	0.91[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs9847131	0.86[ASN][1000 genomes]
rs9878766	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60767000-60782800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:60771000-60772000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr3:60771200-60772200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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