Variant report

Variant	rs926139
Chromosome Location	chr3:60766875-60766876
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:60761343..60763218-chr3:60765040..60767316,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11130781	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11130782	0.83[ASN][1000 genomes]
rs11710207	0.83[ASN][1000 genomes]
rs12185984	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13059280	0.83[ASN][1000 genomes]
rs13065371	0.83[ASN][1000 genomes]
rs13067083	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13098348	0.83[ASN][1000 genomes]
rs13098466	0.83[ASN][1000 genomes]
rs13098545	0.83[ASN][1000 genomes]
rs13099811	0.83[ASN][1000 genomes]
rs1569346	0.90[ASN][1000 genomes]
rs2064012	0.88[CEU][hapmap];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2142294	0.89[ASN][1000 genomes]
rs2142296	0.81[CEU][hapmap]
rs2205343	0.83[ASN][1000 genomes]
rs2205344	0.83[ASN][1000 genomes]
rs2205352	0.84[CEU][hapmap]
rs2205353	0.89[CEU][hapmap]
rs2364293	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2736736	0.81[CEU][hapmap]
rs4974227	0.80[ASN][1000 genomes]
rs4974230	0.96[CEU][hapmap];0.81[ASN][1000 genomes]
rs57203484	0.83[ASN][1000 genomes]
rs57595293	0.83[ASN][1000 genomes]
rs60858106	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62249311	0.80[ASN][1000 genomes]
rs6771383	0.90[ASN][1000 genomes]
rs6786213	0.82[EUR][1000 genomes]
rs6787897	0.85[CEU][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7429680	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9823013	0.84[CEU][hapmap];0.81[ASN][1000 genomes]
rs9840977	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9842407	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9847131	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9878766	0.85[CEU][hapmap];0.81[ASN][1000 genomes]
rs9881274	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9882068	0.85[CEU][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60765600-60767000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:60766800-60770600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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