Variant report

Variant	rs237972
Chromosome Location	chr18:40062213-40062214
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs11876278	0.91[EUR][1000 genomes]
rs11876287	0.87[EUR][1000 genomes]
rs12954824	0.84[ASN][1000 genomes]
rs1431834	0.85[EUR][1000 genomes]
rs1431838	0.91[EUR][1000 genomes]
rs1431840	0.91[EUR][1000 genomes]
rs1431841	0.91[EUR][1000 genomes]
rs1583210	0.87[EUR][1000 genomes]
rs168300	0.81[EUR][1000 genomes]
rs16976266	0.87[EUR][1000 genomes]
rs16976272	0.88[EUR][1000 genomes]
rs16976273	0.87[EUR][1000 genomes]
rs16976274	0.87[EUR][1000 genomes]
rs180830	0.80[EUR][1000 genomes]
rs183552	0.94[EUR][1000 genomes]
rs189389	0.80[EUR][1000 genomes]
rs237970	0.85[EUR][1000 genomes]
rs2584798	0.80[EUR][1000 genomes]
rs346182	0.81[EUR][1000 genomes]
rs346183	0.85[EUR][1000 genomes]
rs346184	0.85[EUR][1000 genomes]
rs346185	0.81[EUR][1000 genomes]
rs346186	0.81[EUR][1000 genomes]
rs346187	0.81[EUR][1000 genomes]
rs346188	0.81[EUR][1000 genomes]
rs346189	0.81[EUR][1000 genomes]
rs346190	0.85[EUR][1000 genomes]
rs346191	0.81[EUR][1000 genomes]
rs346192	0.85[EUR][1000 genomes]
rs346196	0.81[EUR][1000 genomes]
rs346197	0.86[EUR][1000 genomes]
rs346212	0.81[EUR][1000 genomes]
rs346213	0.81[EUR][1000 genomes]
rs346214	0.81[EUR][1000 genomes]
rs346222	0.81[EUR][1000 genomes]
rs346223	0.81[EUR][1000 genomes]
rs346224	0.85[EUR][1000 genomes]
rs346225	0.85[EUR][1000 genomes]
rs346234	0.93[EUR][1000 genomes]
rs346238	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs346263	0.80[EUR][1000 genomes]
rs346264	0.80[EUR][1000 genomes]
rs346265	0.80[EUR][1000 genomes]
rs346266	0.80[EUR][1000 genomes]
rs346267	0.80[EUR][1000 genomes]
rs346268	0.80[EUR][1000 genomes]
rs346270	0.80[EUR][1000 genomes]
rs400064	0.85[EUR][1000 genomes]
rs421138	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4243264	0.93[ASN][1000 genomes]
rs4312390	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs441362	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs445364	0.80[EUR][1000 genomes]
rs4503884	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4533372	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4575617	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4588064	0.87[EUR][1000 genomes]
rs4890404	0.84[EUR][1000 genomes]
rs60232560	0.88[EUR][1000 genomes]
rs675137	0.80[EUR][1000 genomes]
rs67530880	0.91[EUR][1000 genomes]
rs67734761	0.91[EUR][1000 genomes]
rs7232069	0.93[ASN][1000 genomes]
rs7239826	0.87[EUR][1000 genomes]
rs7240250	0.87[EUR][1000 genomes]
rs72893563	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72893564	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72893569	1.00[ASN][1000 genomes]
rs72893572	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72893580	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72893582	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72893596	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72895334	0.83[ASN][1000 genomes]
rs72907077	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8083332	0.88[EUR][1000 genomes]
rs8087817	0.87[EUR][1000 genomes]
rs971293	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv909572	chr18:39938510-40064000	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv3447158	chr18:40045478-40320720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1055614	chr18:40049038-40062317	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	nsv1056694	chr18:40049038-40082667	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	nsv909573	chr18:40050363-40131269	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv1058002	chr18:40056557-40076785	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40062200-40063400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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