Variant report

Variant	rs12954824
Chromosome Location	chr18:40135969-40135970
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10775473	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11082279	0.86[EUR][1000 genomes]
rs11082280	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12373388	0.87[EUR][1000 genomes]
rs12457109	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12953789	0.88[EUR][1000 genomes]
rs237972	0.84[ASN][1000 genomes]
rs346238	0.84[ASN][1000 genomes]
rs4243264	0.90[ASN][1000 genomes]
rs4257289	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4274502	0.87[EUR][1000 genomes]
rs4312390	0.90[ASN][1000 genomes]
rs4350653	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4350654	0.87[EUR][1000 genomes]
rs4396613	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4503884	0.90[ASN][1000 genomes]
rs4533372	0.90[ASN][1000 genomes]
rs4575617	0.90[ASN][1000 genomes]
rs4890405	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7227825	0.81[EUR][1000 genomes]
rs7228153	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7232069	0.90[ASN][1000 genomes]
rs7237838	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72893563	0.84[ASN][1000 genomes]
rs72893564	0.84[ASN][1000 genomes]
rs72893569	0.84[ASN][1000 genomes]
rs72893572	0.84[ASN][1000 genomes]
rs72893580	0.90[ASN][1000 genomes]
rs72893582	0.90[ASN][1000 genomes]
rs72893596	0.90[ASN][1000 genomes]
rs72895334	0.81[ASN][1000 genomes]
rs72907077	0.84[ASN][1000 genomes]
rs8085968	0.87[EUR][1000 genomes]
rs9945841	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3447158	chr18:40045478-40320720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2754458	chr18:40070202-40164902	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40135600-40136600	Active TSS	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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