Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10775473	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11082279	0.87[EUR][1000 genomes]
rs12373388	0.84[EUR][1000 genomes]
rs12457109	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12953789	0.84[EUR][1000 genomes]
rs12954824	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4243262	0.89[ASN][1000 genomes]
rs4257289	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4274502	0.87[EUR][1000 genomes]
rs4350653	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4350654	0.84[EUR][1000 genomes]
rs4396613	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4890405	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7227825	0.80[EUR][1000 genomes]
rs7228101	0.87[ASN][1000 genomes]
rs7228153	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7230640	0.89[ASN][1000 genomes]
rs7231626	0.89[ASN][1000 genomes]
rs7237838	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7238529	0.89[ASN][1000 genomes]
rs8085968	0.85[EUR][1000 genomes]
rs9945841	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9964460	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3447158	chr18:40045478-40320720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2754458	chr18:40070202-40164902	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40126000-40135600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr18:40135400-40135600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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