Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10775473	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11082280	0.89[ASN][1000 genomes]
rs12457109	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3924664	0.92[EUR][1000 genomes]
rs4243262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4243264	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4257289	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4350653	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4396613	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4514768	0.93[EUR][1000 genomes]
rs4629063	0.93[EUR][1000 genomes]
rs4633808	0.87[EUR][1000 genomes]
rs4890405	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7228101	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7228153	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7229728	0.86[EUR][1000 genomes]
rs7230640	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7231626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7232069	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7237838	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7238529	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9945841	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9951191	0.86[EUR][1000 genomes]
rs9956876	0.85[EUR][1000 genomes]
rs9959682	0.87[EUR][1000 genomes]
rs9964813	0.87[EUR][1000 genomes]
rs9967058	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447158	chr18:40045478-40320720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2754458	chr18:40070202-40164902	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9964460	SYT4	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40154600-40156400	Enhancers	Fetal Lung	lung
2	chr18:40155600-40156600	Weak transcription	Fetal Stomach	stomach
3	chr18:40156000-40158400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr18:40156200-40156600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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