Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10775472	0.86[ASN][1000 genomes]
rs12954826	0.84[ASN][1000 genomes]
rs1431836	0.84[ASN][1000 genomes]
rs3924664	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4243262	0.88[EUR][1000 genomes]
rs4243264	0.84[EUR][1000 genomes]
rs4300738	0.84[ASN][1000 genomes]
rs4303629	0.85[ASN][1000 genomes]
rs4474776	0.82[ASN][1000 genomes]
rs4514768	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4629063	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4633808	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57032575	0.84[ASN][1000 genomes]
rs7228101	0.85[EUR][1000 genomes]
rs7229728	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7230640	0.86[EUR][1000 genomes]
rs7231626	0.87[EUR][1000 genomes]
rs7232069	0.84[EUR][1000 genomes]
rs7238529	0.86[EUR][1000 genomes]
rs7239787	0.85[ASN][1000 genomes]
rs7506104	0.83[ASN][1000 genomes]
rs8086796	0.84[ASN][1000 genomes]
rs8097311	0.83[AFR][1000 genomes]
rs9951191	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9956876	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9959682	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9964460	0.87[EUR][1000 genomes]
rs9967058	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447158	chr18:40045478-40320720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2754458	chr18:40070202-40164902	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9964813	SYT4	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40156000-40158400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr18:40156600-40158400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr18:40156800-40157000	Enhancers	Fetal Stomach	stomach

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