Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10775472	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12954826	0.93[ASN][1000 genomes]
rs1431836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs180829	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs346229	0.83[EUR][1000 genomes]
rs346230	0.80[EUR][1000 genomes]
rs346237	0.84[EUR][1000 genomes]
rs4300738	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4303629	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4474776	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4633808	0.84[ASN][1000 genomes]
rs57032575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7229728	0.85[ASN][1000 genomes]
rs7239787	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7506104	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8096568	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9951191	0.84[ASN][1000 genomes]
rs9956876	0.85[ASN][1000 genomes]
rs9959682	0.85[ASN][1000 genomes]
rs9964813	0.84[ASN][1000 genomes]
rs9967058	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3447158	chr18:40045478-40320720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv909573	chr18:40050363-40131269	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv2754458	chr18:40070202-40164902	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40089800-40113000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr18:40101200-40105400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr18:40101600-40105800	Weak transcription	Fetal Intestine Large	intestine
4	chr18:40102600-40105800	Weak transcription	Fetal Intestine Small	intestine
5	chr18:40102800-40105600	Weak transcription	Stomach Mucosa	stomach
6	chr18:40104800-40107400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr18:40105000-40105800	Enhancers	Gastric	stomach
8	chr18:40105000-40107000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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