Variant report

Variant	rs180829
Chromosome Location	chr18:40063124-40063125
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10775472	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12954826	0.82[ASN][1000 genomes]
rs1431836	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs346195	0.83[EUR][1000 genomes]
rs346211	0.81[EUR][1000 genomes]
rs346221	0.81[EUR][1000 genomes]
rs346229	0.86[EUR][1000 genomes]
rs346230	0.83[EUR][1000 genomes]
rs346237	0.88[EUR][1000 genomes]
rs394078	0.83[EUR][1000 genomes]
rs4300738	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4303629	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4474776	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57032575	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7239787	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7506104	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8086796	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8096568	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv909572	chr18:39938510-40064000	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv3447158	chr18:40045478-40320720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1056694	chr18:40049038-40082667	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	nsv909573	chr18:40050363-40131269	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv1058002	chr18:40056557-40076785	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40062200-40063400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr18:40062800-40063200	Enhancers	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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