Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10775472	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12954826	0.94[ASN][1000 genomes]
rs1431836	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs180829	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs346229	0.82[EUR][1000 genomes]
rs346237	0.82[EUR][1000 genomes]
rs4300738	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4303629	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4474776	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4633808	0.83[ASN][1000 genomes]
rs57032575	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7229728	0.84[ASN][1000 genomes]
rs7239787	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8086796	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8096568	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9951191	0.84[ASN][1000 genomes]
rs9956876	0.84[ASN][1000 genomes]
rs9959682	0.84[ASN][1000 genomes]
rs9964813	0.83[ASN][1000 genomes]
rs9967058	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3447158	chr18:40045478-40320720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv909573	chr18:40050363-40131269	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv2754458	chr18:40070202-40164902	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40089800-40113000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr18:40106400-40113200	Weak transcription	Fetal Intestine Small	intestine
3	chr18:40107000-40113200	Weak transcription	Stomach Mucosa	stomach
4	chr18:40107000-40115800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr18:40109800-40111800	Enhancers	Fetal Stomach	stomach
6	chr18:40110000-40111000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr18:40110000-40114000	Enhancers	Rectal Smooth Muscle	rectum
8	chr18:40110200-40114000	Enhancers	Colon Smooth Muscle	Colon

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