Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RIT2-5	chr18:40159115-40159391	ucscGeneNc_uc002lax_2
2	lnc-PIK3C3-9	chr18:40159118-40159393	l_1565_chr18:40159117-40160441_testes

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10775472	0.87[ASN][1000 genomes]
rs12954826	0.84[ASN][1000 genomes]
rs1431836	0.84[ASN][1000 genomes]
rs3924664	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4243262	0.85[EUR][1000 genomes]
rs4243264	0.82[EUR][1000 genomes]
rs4300738	0.84[ASN][1000 genomes]
rs4303629	0.86[ASN][1000 genomes]
rs4474776	0.83[ASN][1000 genomes]
rs4514768	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4629063	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4633808	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57032575	0.84[ASN][1000 genomes]
rs7228101	0.84[EUR][1000 genomes]
rs7229728	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7230640	0.86[EUR][1000 genomes]
rs7231626	0.85[EUR][1000 genomes]
rs7232069	0.82[EUR][1000 genomes]
rs7238529	0.86[EUR][1000 genomes]
rs7239787	0.86[ASN][1000 genomes]
rs7506104	0.84[ASN][1000 genomes]
rs8086796	0.84[ASN][1000 genomes]
rs8096568	0.80[ASN][1000 genomes]
rs9956876	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9959682	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9964460	0.86[EUR][1000 genomes]
rs9964813	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9967058	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447158	chr18:40045478-40320720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2754458	chr18:40070202-40164902	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40158200-40159400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr18:40158400-40159400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr18:40159200-40159400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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