Variant report

Variant	rs3924664
Chromosome Location	chr18:40155789-40155790
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs4243262	0.91[EUR][1000 genomes]
rs4243264	0.87[EUR][1000 genomes]
rs4514768	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4629063	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4633808	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7228101	0.90[EUR][1000 genomes]
rs7229728	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7230640	0.92[EUR][1000 genomes]
rs7231626	0.90[EUR][1000 genomes]
rs7232069	0.87[EUR][1000 genomes]
rs7238529	0.92[EUR][1000 genomes]
rs9951191	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9956876	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9959682	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9964460	0.92[EUR][1000 genomes]
rs9964813	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9967058	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447158	chr18:40045478-40320720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2754458	chr18:40070202-40164902	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40154600-40156400	Enhancers	Fetal Lung	lung
2	chr18:40155600-40156000	Enhancers	Muscle Satellite Cultured Cells	--
3	chr18:40155600-40156600	Weak transcription	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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