Variant report

Variant	rs9967058
Chromosome Location	chr18:40162790-40162791
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10775472	0.86[ASN][1000 genomes]
rs11082282	0.80[AFR][1000 genomes]
rs11082283	0.80[AFR][1000 genomes]
rs11873645	0.80[AFR][1000 genomes]
rs11873684	0.80[AFR][1000 genomes]
rs11873748	0.80[AFR][1000 genomes]
rs11876814	0.80[AFR][1000 genomes]
rs12954826	0.85[ASN][1000 genomes]
rs1431836	0.85[ASN][1000 genomes]
rs3924664	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4243262	0.84[EUR][1000 genomes]
rs4243264	0.83[EUR][1000 genomes]
rs4300738	0.85[ASN][1000 genomes]
rs4303629	0.86[ASN][1000 genomes]
rs4401125	0.80[AFR][1000 genomes]
rs4416104	0.80[AFR][1000 genomes]
rs4474776	0.84[ASN][1000 genomes]
rs4506996	0.80[AFR][1000 genomes]
rs4514768	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4629063	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4633808	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56737646	0.80[AFR][1000 genomes]
rs56905850	0.80[AFR][1000 genomes]
rs57032575	0.85[ASN][1000 genomes]
rs57949888	0.80[AFR][1000 genomes]
rs6507488	0.80[AFR][1000 genomes]
rs7228020	0.80[AFR][1000 genomes]
rs7228056	0.80[AFR][1000 genomes]
rs7228101	0.84[EUR][1000 genomes]
rs7229728	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7230640	0.85[EUR][1000 genomes]
rs7231626	0.84[EUR][1000 genomes]
rs7232069	0.83[EUR][1000 genomes]
rs7232327	0.80[AFR][1000 genomes]
rs7238529	0.86[EUR][1000 genomes]
rs7239787	0.86[ASN][1000 genomes]
rs7506104	0.84[ASN][1000 genomes]
rs8086796	0.85[ASN][1000 genomes]
rs8090489	0.80[AFR][1000 genomes]
rs8091693	0.80[AFR][1000 genomes]
rs8096568	0.81[ASN][1000 genomes]
rs9951191	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9956876	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9959682	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9964460	0.85[EUR][1000 genomes]
rs9964813	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447158	chr18:40045478-40320720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2754458	chr18:40070202-40164902	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv1822969	chr18:40161230-40164937	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40160800-40163400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr18:40160800-40166400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr18:40161400-40166400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr18:40162200-40163200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr18:40162400-40163600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr18:40162400-40164000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr18:40162400-40164200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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