Variant report

Variant	rs12954826
Chromosome Location	chr18:40135972-40135973
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10775472	0.93[ASN][1000 genomes]
rs1431836	0.93[ASN][1000 genomes]
rs180829	0.82[ASN][1000 genomes]
rs4300738	0.92[ASN][1000 genomes]
rs4303629	0.92[ASN][1000 genomes]
rs4474776	0.92[ASN][1000 genomes]
rs4633808	0.84[ASN][1000 genomes]
rs57032575	0.93[ASN][1000 genomes]
rs7229728	0.85[ASN][1000 genomes]
rs7239787	0.92[ASN][1000 genomes]
rs7506104	0.94[ASN][1000 genomes]
rs8086796	0.93[ASN][1000 genomes]
rs8096568	0.86[ASN][1000 genomes]
rs9951191	0.84[ASN][1000 genomes]
rs9956876	0.85[ASN][1000 genomes]
rs9959682	0.85[ASN][1000 genomes]
rs9964813	0.84[ASN][1000 genomes]
rs9967058	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3447158	chr18:40045478-40320720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2754458	chr18:40070202-40164902	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40135600-40136600	Active TSS	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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