Variant report
| Variant | rs7230640 |
|---|---|
| Chromosome Location | chr18:40154420-40154421 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10775473 | 0.83[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11082280 | 0.89[ASN][1000 genomes] |
| rs12457109 | 0.83[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs3924664 | 0.92[EUR][1000 genomes] |
| rs4243262 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4243264 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs4257289 | 0.83[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4350653 | 0.83[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4396613 | 0.80[AFR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4514768 | 0.92[EUR][1000 genomes] |
| rs4629063 | 0.92[EUR][1000 genomes] |
| rs4633808 | 0.85[EUR][1000 genomes] |
| rs4890405 | 0.83[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7228101 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7228153 | 0.82[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7229728 | 0.88[EUR][1000 genomes] |
| rs7231626 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7232069 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7237838 | 0.81[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7238529 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9945841 | 0.83[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9951191 | 0.86[EUR][1000 genomes] |
| rs9956876 | 0.85[EUR][1000 genomes] |
| rs9959682 | 0.86[EUR][1000 genomes] |
| rs9964460 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9964813 | 0.86[EUR][1000 genomes] |
| rs9967058 | 0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3447158 | chr18:40045478-40320720 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv2754458 | chr18:40070202-40164902 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:40154200-40155000 | Enhancers | Cortex derived primary cultured neurospheres | brain |
