Variant report

Variant	rs346237
Chromosome Location	chr18:40058395-40058396
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11082276	0.83[ASN][1000 genomes]
rs1431836	0.84[EUR][1000 genomes]
rs180829	0.88[EUR][1000 genomes]
rs2053517	0.83[ASN][1000 genomes]
rs2336239	0.85[ASN][1000 genomes]
rs346195	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs346211	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs346216	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs346219	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs346221	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs346229	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs346230	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs346262	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs346440	0.83[ASN][1000 genomes]
rs394078	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4300738	0.82[EUR][1000 genomes]
rs4303629	0.84[EUR][1000 genomes]
rs4474776	0.84[EUR][1000 genomes]
rs57032575	0.84[EUR][1000 genomes]
rs7239787	0.84[EUR][1000 genomes]
rs7506104	0.82[EUR][1000 genomes]
rs8086796	0.84[EUR][1000 genomes]
rs8093861	0.83[ASN][1000 genomes]
rs8096568	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv909572	chr18:39938510-40064000	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1056192	chr18:40040474-40058395	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
5	esv3447158	chr18:40045478-40320720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1055614	chr18:40049038-40062317	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	nsv1056694	chr18:40049038-40082667	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv2762899	chr18:40049050-40058395	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	nsv909573	chr18:40050363-40131269	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv576747	chr18:40054104-40058395	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
11	nsv576748	chr18:40054104-40059621	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
12	nsv817790	chr18:40055787-40058893	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
13	nsv1058002	chr18:40056557-40076785	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
14	esv2760483	chr18:40056569-40060995	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40057600-40060800	Weak transcription	Fetal Kidney	kidney

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