Variant report

Variant	rs72893572
Chromosome Location	chr18:40094484-40094485
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11876278	0.91[EUR][1000 genomes]
rs11876287	0.92[EUR][1000 genomes]
rs12954824	0.84[ASN][1000 genomes]
rs1431834	0.80[EUR][1000 genomes]
rs1431838	0.91[EUR][1000 genomes]
rs1431840	0.91[EUR][1000 genomes]
rs1431841	0.91[EUR][1000 genomes]
rs1583210	0.92[EUR][1000 genomes]
rs16976266	0.93[EUR][1000 genomes]
rs16976272	0.94[EUR][1000 genomes]
rs16976273	0.92[EUR][1000 genomes]
rs16976274	0.92[EUR][1000 genomes]
rs183552	0.88[EUR][1000 genomes]
rs237970	0.80[EUR][1000 genomes]
rs237972	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs346183	0.80[EUR][1000 genomes]
rs346184	0.80[EUR][1000 genomes]
rs346190	0.80[EUR][1000 genomes]
rs346192	0.80[EUR][1000 genomes]
rs346197	0.82[EUR][1000 genomes]
rs346224	0.80[EUR][1000 genomes]
rs346225	0.80[EUR][1000 genomes]
rs346234	0.90[EUR][1000 genomes]
rs346238	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs400064	0.80[EUR][1000 genomes]
rs421138	0.85[EUR][1000 genomes]
rs4243264	0.93[ASN][1000 genomes]
rs4312390	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs441362	0.82[EUR][1000 genomes]
rs4503884	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4533372	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4575617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4588064	0.92[EUR][1000 genomes]
rs4890404	0.89[EUR][1000 genomes]
rs60232560	0.94[EUR][1000 genomes]
rs6507480	0.85[EUR][1000 genomes]
rs67530880	0.91[EUR][1000 genomes]
rs67734761	0.91[EUR][1000 genomes]
rs7232069	0.93[ASN][1000 genomes]
rs7239826	0.92[EUR][1000 genomes]
rs7240250	0.92[EUR][1000 genomes]
rs72893563	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72893564	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72893569	1.00[ASN][1000 genomes]
rs72893580	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72893582	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72893596	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72895334	0.83[ASN][1000 genomes]
rs72907077	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8083332	0.94[EUR][1000 genomes]
rs8087817	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3447158	chr18:40045478-40320720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv909573	chr18:40050363-40131269	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv2754458	chr18:40070202-40164902	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40089800-40113000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr18:40093400-40095200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr18:40093400-40095200	Enhancers	NH-A	brain
4	chr18:40093800-40094800	Enhancers	Osteobl	bone
5	chr18:40094200-40095000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr18:40094200-40095000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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