Variant report

Variant	rs2385168
Chromosome Location	chr7:104078657-104078658
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10273121	0.83[MEX][hapmap]
rs10273435	0.92[MEX][hapmap]
rs10953435	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs17137711	0.82[CHD][hapmap]
rs4730010	0.84[MEX][hapmap]
rs4730015	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6465986	0.90[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap]
rs6957611	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap]
rs6978267	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888925	chr7:104047599-104170560	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs2385168	MEPCE	cis	cerebellum	SCAN
rs2385168	DPY19L2P2	cis	parietal	SCAN
rs2385168	PRKRIP1	cis	parietal	SCAN
rs2385168	GPR22	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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