Variant report
| Variant | rs6465986 |
|---|---|
| Chromosome Location | chr7:104076186-104076187 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:104076045..104077944-chr7:104087958..104090019,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:7)
| rs_ID | r2[population] |
|---|---|
| rs17137711 | 0.92[CHD][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs1806389 | 0.89[JPT][hapmap] |
| rs2385168 | 0.90[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap] |
| rs2385172 | 0.89[JPT][hapmap] |
| rs4730015 | 0.89[CHB][hapmap];0.89[JPT][hapmap] |
| rs6952537 | 0.89[JPT][hapmap] |
| rs6957611 | 0.90[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv888925 | chr7:104047599-104170560 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
mRNA abundance (count:3)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs6465986 | DPY19L2P2 | cis | parietal | SCAN |
| rs6465986 | RABL5 | cis | cerebellum | SCAN |
| rs6465986 | FBXO24 | cis | cerebellum | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
