Variant report
| Variant | rs6957611 |
|---|---|
| Chromosome Location | chr7:104076814-104076815 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:104076045..104077944-chr7:104087958..104090019,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs10273121 | 0.81[MEX][hapmap] |
| rs10273435 | 0.91[MEX][hapmap] |
| rs10953435 | 0.90[CHB][hapmap];0.90[JPT][hapmap] |
| rs17137711 | 0.82[CHD][hapmap] |
| rs2385168 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap] |
| rs4730010 | 0.82[MEX][hapmap] |
| rs4730015 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6465986 | 0.90[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv888925 | chr7:104047599-104170560 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
mRNA abundance (count:4)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs6957611 | GPR22 | cis | parietal | SCAN |
| rs6957611 | MEPCE | cis | cerebellum | SCAN |
| rs6957611 | DPY19L2P2 | cis | parietal | SCAN |
| rs6957611 | PRKRIP1 | cis | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
