Variant report

Variant	rs2391168
Chromosome Location	chr7:25862790-25862791
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:25862249..25865211-chr7:25870561..25873090,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10225976	0.91[ASN][1000 genomes]
rs10238703	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10241634	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10241659	0.96[ASN][1000 genomes]
rs10242536	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10245353	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10260677	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10262483	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10267498	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10271088	0.97[ASN][1000 genomes]
rs10271460	0.96[ASN][1000 genomes]
rs10274306	0.96[ASN][1000 genomes]
rs10282436	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1055144	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10951112	0.93[EUR][1000 genomes]
rs11770186	1.00[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12666961	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1451382	0.95[ASN][1000 genomes]
rs1451385	0.84[CEU][hapmap]
rs28392961	0.94[EUR][1000 genomes]
rs28473292	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28858973	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2893220	0.80[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2893221	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35766302	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4141278	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs41469349	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4722530	0.94[EUR][1000 genomes]
rs56376645	0.89[ASN][1000 genomes]
rs57246313	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60643312	0.93[ASN][1000 genomes]
rs61140461	0.96[ASN][1000 genomes]
rs62447896	0.95[ASN][1000 genomes]
rs7782246	0.80[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7782292	0.96[ASN][1000 genomes]
rs7798002	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7798130	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7798431	0.96[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9987000	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv830928	chr7:25820147-25965014	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25844200-25869200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:25847800-25869000	Weak transcription	Psoas Muscle	Psoas
3	chr7:25861200-25864600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:25861400-25863000	Weak transcription	GM12878-XiMat	blood
5	chr7:25862400-25862800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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