Variant report

Variant	rs4141278
Chromosome Location	chr7:25857525-25857526
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:25855015..25857830-chr7:25872631..25874707,2	K562	blood:
2	chr7:25852328..25854029-chr7:25857318..25858829,2	K562	blood:
3	chr7:25851718..25853437-chr7:25856979..25859468,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10238703	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10241634	0.87[EUR][1000 genomes]
rs10241659	0.82[ASN][1000 genomes]
rs10242536	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10245353	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10260677	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10262483	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10267498	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10271088	0.83[ASN][1000 genomes]
rs10271460	0.82[ASN][1000 genomes]
rs10274306	0.82[ASN][1000 genomes]
rs10282436	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1055144	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10951112	0.88[EUR][1000 genomes]
rs11770186	1.00[CEU][hapmap];0.81[CHB][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12666961	1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[EUR][1000 genomes]
rs1451382	0.83[ASN][1000 genomes]
rs1451385	0.88[CEU][hapmap]
rs2391168	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28392961	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28473292	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28858973	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2893220	0.82[ASN][1000 genomes]
rs2893221	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35766302	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41469349	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4722530	0.89[EUR][1000 genomes]
rs57246313	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61140461	0.82[ASN][1000 genomes]
rs62447896	0.81[ASN][1000 genomes]
rs7782246	0.82[ASN][1000 genomes]
rs7782292	0.82[ASN][1000 genomes]
rs7798002	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7798130	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7798431	0.84[ASN][1000 genomes]
rs9987000	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv830928	chr7:25820147-25965014	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25844200-25869200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:25847800-25869000	Weak transcription	Psoas Muscle	Psoas
3	chr7:25857200-25858200	Enhancers	Colon Smooth Muscle	Colon
4	chr7:25857400-25858200	Enhancers	Fetal Stomach	stomach

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