Variant report

Variant	rs2893221
Chromosome Location	chr7:25869200-25869201
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10225976	0.95[ASN][1000 genomes]
rs10238703	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10241634	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10241659	0.93[ASN][1000 genomes]
rs10242536	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10245353	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10260677	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10262483	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10267498	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10271088	0.93[ASN][1000 genomes]
rs10271460	0.93[ASN][1000 genomes]
rs10274306	0.93[ASN][1000 genomes]
rs10282436	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1055144	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10951112	0.95[EUR][1000 genomes]
rs11770186	0.90[CEU][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12666961	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1451382	0.91[ASN][1000 genomes]
rs1451385	0.83[CEU][hapmap]
rs2391168	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28392961	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs28473292	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28858973	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2893220	0.93[ASN][1000 genomes]
rs35766302	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4141278	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs41469349	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4722530	0.95[EUR][1000 genomes]
rs56376645	0.93[ASN][1000 genomes]
rs57246313	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60643312	0.95[ASN][1000 genomes]
rs61140461	0.93[ASN][1000 genomes]
rs62447896	0.91[ASN][1000 genomes]
rs73093663	0.81[AFR][1000 genomes]
rs7782246	0.93[ASN][1000 genomes]
rs7782292	0.93[ASN][1000 genomes]
rs7798002	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7798130	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7798431	0.91[ASN][1000 genomes]
rs966042	0.81[AFR][1000 genomes]
rs9987000	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv830928	chr7:25820147-25965014	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25844200-25869200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:25864200-25870000	Weak transcription	Fetal Kidney	kidney
3	chr7:25868800-25870000	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr7:25868800-25873400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:25869000-25869200	Enhancers	Fetal Heart	heart
6	chr7:25869000-25869600	Enhancers	Psoas Muscle	Psoas
7	chr7:25869000-25869600	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr7:25869000-25872000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr7:25869000-25874000	Enhancers	Fetal Stomach	stomach
10	chr7:25869200-25870200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr7:25869200-25871200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:25869200-25871200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:25869200-25873000	Enhancers	Fetal Lung	lung

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