Variant report

Variant	rs73093663
Chromosome Location	chr7:25888067-25888068
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NFE2L3-1	chr7:25886348-25888418	XLOC_006016

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10242536	0.81[AFR][1000 genomes]
rs10262483	0.81[AFR][1000 genomes]
rs10267498	0.81[AFR][1000 genomes]
rs1055144	0.81[AFR][1000 genomes]
rs11770186	0.81[AFR][1000 genomes]
rs2893221	0.81[AFR][1000 genomes]
rs57246313	0.81[AFR][1000 genomes]
rs966042	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv830928	chr7:25820147-25965014	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25880000-25888800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr7:25880000-25889000	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr7:25881800-25889000	Enhancers	Osteobl	bone
4	chr7:25882200-25892000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:25883400-25889000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr7:25883400-25891000	Enhancers	Stomach Smooth Muscle	stomach
7	chr7:25883400-25891200	Enhancers	Fetal Heart	heart
8	chr7:25883800-25892600	Enhancers	Fetal Lung	lung
9	chr7:25884600-25889000	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr7:25884600-25890600	Enhancers	Fetal Stomach	stomach
11	chr7:25884600-25890800	Enhancers	Placenta	Placenta
12	chr7:25884800-25889800	Enhancers	Placenta Amnion	Placenta Amnion
13	chr7:25885000-25888200	Enhancers	Fetal Kidney	kidney
14	chr7:25885200-25889000	Enhancers	Adipose Nuclei	Adipose
15	chr7:25885200-25890800	Enhancers	Fetal Muscle Leg	muscle
16	chr7:25885400-25889000	Weak transcription	K562	blood
17	chr7:25885400-25890800	Enhancers	Rectal Smooth Muscle	rectum
18	chr7:25885600-25889000	Weak transcription	Fetal Intestine Large	intestine
19	chr7:25885600-25891400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr7:25885800-25888400	Weak transcription	Fetal Intestine Small	intestine
21	chr7:25885800-25888400	Enhancers	NH-A	brain
22	chr7:25885800-25888800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr7:25885800-25891400	Enhancers	Colon Smooth Muscle	Colon
24	chr7:25886000-25888800	Enhancers	HSMM	muscle
25	chr7:25886200-25889000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr7:25886200-25889000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr7:25886200-25889000	Enhancers	NHDF-Ad	bronchial
28	chr7:25886200-25889000	Enhancers	NHLF	lung
29	chr7:25886600-25889000	Weak transcription	Pancreas	Pancrea
30	chr7:25886600-25889000	Enhancers	A549	lung
31	chr7:25886600-25891600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr7:25887000-25890200	Weak transcription	Brain Germinal Matrix	brain
33	chr7:25887200-25888400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr7:25887200-25889000	Weak transcription	Brain Angular Gyrus	brain
35	chr7:25887200-25889000	Weak transcription	Brain Cingulate Gyrus	brain
36	chr7:25887200-25889000	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr7:25887200-25889000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr7:25887200-25889000	Weak transcription	Brain Substantia Nigra	brain
39	chr7:25887400-25888800	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr7:25887400-25888800	Enhancers	HSMMtube	muscle
41	chr7:25887400-25889000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr7:25887400-25889000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr7:25887400-25889000	Weak transcription	Brain Hippocampus Middle	brain
44	chr7:25887400-25889000	Weak transcription	Right Atrium	heart
45	chr7:25887400-25889200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr7:25887400-25889600	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr7:25887600-25888800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr7:25887600-25888800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr7:25887600-25888800	Weak transcription	Brain Anterior Caudate	brain
50	chr7:25887600-25889000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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