Variant report

Variant	rs966042
Chromosome Location	chr7:25897388-25897389
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:25895415..25898294-chr7:25979885..25982093,2	K562	blood:
2	chr7:25894784..25898696-chr7:26228733..26232018,3	MCF-7	breast:
3	chr7:25878624..25881558-chr7:25895080..25897783,3	K562	blood:
4	chr7:25878624..25881558-chr7:25895267..25897783,2	K562	blood:
5	chr7:25891320..25893042-chr7:25894595..25897680,4	K562	blood:
6	chr7:25894581..25899810-chr7:26238604..26243593,7	K562	blood:
7	chr7:25893947..25899810-chr7:26238759..26243593,6	K562	blood:
8	chr7:25896710..25899572-chr7:25900375..25902445,3	MCF-7	breast:
9	chr7:25893800..25898221-chr7:26239034..26243289,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000122565	Chromatin interaction
ENSG00000122566	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10242536	0.81[AFR][1000 genomes]
rs10262483	0.81[AFR][1000 genomes]
rs10267498	0.81[AFR][1000 genomes]
rs1055144	0.81[AFR][1000 genomes]
rs11770186	0.84[ASW][hapmap];0.83[LWK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs2893221	0.81[AFR][1000 genomes]
rs57246313	0.81[AFR][1000 genomes]
rs73093663	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv830928	chr7:25820147-25965014	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25893400-25898000	Active TSS	NHDF-Ad	bronchial
2	chr7:25894000-25897400	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr7:25894000-25897800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:25894200-25897600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:25894800-25897400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr7:25895000-25897400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:25895000-25897600	Active TSS	Psoas Muscle	Psoas
8	chr7:25895000-25898800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr7:25895200-25897400	Active TSS	HSMM	muscle
10	chr7:25895400-25897600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr7:25895400-25897600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
12	chr7:25895600-25897400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:25895600-25897600	Active TSS	H9 Cell Line	embryonic stem cell
14	chr7:25895600-25897600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:25895600-25897800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr7:25895800-25897400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr7:25895800-25897400	Bivalent/Poised TSS	Brain Anterior Caudate	brain
18	chr7:25895800-25897600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr7:25895800-25897600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr7:25895800-25897600	Active TSS	Right Atrium	heart
21	chr7:25896000-25897400	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
22	chr7:25896000-25897400	Active TSS	Skeletal Muscle Male	skeletal muscle
23	chr7:25896000-25897600	Active TSS	HUES6 Cell Line	embryonic stem cell
24	chr7:25896000-25897600	Active TSS	iPS-15b Cell Line	embryonic stem cell
25	chr7:25896000-25897600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr7:25896000-25897600	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
27	chr7:25896000-25897600	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
28	chr7:25896000-25897600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
29	chr7:25896000-25897800	Bivalent/Poised TSS	A549	lung
30	chr7:25896000-25898400	Bivalent Enhancer	Fetal Heart	heart
31	chr7:25896200-25897400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr7:25896200-25897400	Active TSS	HUES48 Cell Line	embryonic stem cell
33	chr7:25896200-25897400	Active TSS	HUES64 Cell Line	embryonic stem cell
34	chr7:25896200-25897400	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
35	chr7:25896200-25897400	Active TSS	HSMMtube	muscle
36	chr7:25896200-25897600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
37	chr7:25896200-25897600	Active TSS	Right Ventricle	heart
38	chr7:25896200-25898400	ZNF genes & repeats	Spleen	Spleen
39	chr7:25896400-25897400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr7:25896400-25897400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
41	chr7:25896400-25897400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr7:25896400-25897400	Active TSS	Fetal Kidney	kidney
43	chr7:25896400-25897400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
44	chr7:25896400-25897400	Active TSS	Rectal Mucosa Donor 29	rectum
45	chr7:25896400-25897400	Active TSS	HUVEC	blood vessel
46	chr7:25896400-25897400	Active TSS	NHEK	skin
47	chr7:25896400-25897800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr7:25896600-25897400	Bivalent Enhancer	Primary B cells from cord blood	blood
49	chr7:25896600-25897400	Active TSS	Skeletal Muscle Female	skeletal muscle
50	chr7:25896600-25897600	Bivalent/Poised TSS	Thymus	Thymus

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