Variant report
| Variant | rs2399419 |
|---|---|
| Chromosome Location | chr3:112068145-112068146 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:112052800-112076200 | Weak transcription | Right Ventricle | heart |
| 2 | chr3:112053200-112076400 | Weak transcription | Primary T helper memory cells from peripheral blood 1 | blood |
| 3 | chr3:112054000-112068600 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
| 4 | chr3:112054800-112076800 | Weak transcription | Lung | lung |
| 5 | chr3:112054800-112083000 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 6 | chr3:112055200-112068800 | Weak transcription | Fetal Intestine Small | intestine |
| 7 | chr3:112055600-112080200 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
| 8 | chr3:112055800-112076400 | Weak transcription | Primary T helper naive cells fromperipheralblood | blood |
| 9 | chr3:112056600-112076400 | Weak transcription | Primary T helper cells fromperipheralblood | blood |
| 10 | chr3:112057800-112068800 | Strong transcription | HUES6 Cell Line | embryonic stem cell |
| 11 | chr3:112058800-112069800 | Weak transcription | Brain Dorsolateral Prefrontal Cortex | brain |
| 12 | chr3:112059200-112069000 | Strong transcription | H1 Cell Line | embryonic stem cell |
| 13 | chr3:112059600-112075000 | Strong transcription | Fetal Thymus | thymus |
| 14 | chr3:112061200-112083000 | Weak transcription | Colonic Mucosa | Colon |
| 15 | chr3:112061400-112076000 | Strong transcription | Primary hematopoietic stem cells | blood |
| 16 | chr3:112062400-112069000 | Strong transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 17 | chr3:112062400-112083000 | Weak transcription | Sigmoid Colon | Sigmoid Colon |
| 18 | chr3:112062600-112076600 | Strong transcription | Primary B cells from cord blood | blood |
| 19 | chr3:112062800-112074600 | Strong transcription | Primary B cells from peripheral blood | blood |
| 20 | chr3:112063400-112074200 | Strong transcription | Brain Germinal Matrix | brain |
| 21 | chr3:112063600-112068600 | Strong transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
| 22 | chr3:112064000-112076800 | Weak transcription | Left Ventricle | heart |
| 23 | chr3:112064200-112074200 | Strong transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
| 24 | chr3:112064200-112076800 | Strong transcription | Placenta | Placenta |
| 25 | chr3:112064400-112075000 | Strong transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
| 26 | chr3:112064400-112076800 | Strong transcription | Primary hematopoietic stem cells short term culture | blood |
| 27 | chr3:112064600-112068200 | Strong transcription | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
| 28 | chr3:112064800-112069400 | Genic enhancers | GM12878-XiMat | blood |
| 29 | chr3:112064800-112069800 | Weak transcription | Brain Cingulate Gyrus | brain |
| 30 | chr3:112064800-112077200 | Weak transcription | Rectal Mucosa Donor 29 | rectum |
| 31 | chr3:112065600-112068800 | Strong transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 32 | chr3:112065600-112079600 | Weak transcription | Fetal Intestine Large | intestine |
| 33 | chr3:112066000-112068200 | Weak transcription | Right Atrium | heart |
| 34 | chr3:112066000-112089800 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 35 | chr3:112066200-112068600 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
| 36 | chr3:112066200-112068800 | Weak transcription | Rectal Mucosa Donor 31 | rectum |
| 37 | chr3:112066200-112073400 | Genic enhancers | iPS-18 Cell Line | embryonic stem cell |
| 38 | chr3:112066600-112071000 | Enhancers | Brain Substantia Nigra | brain |
| 39 | chr3:112066600-112073600 | Genic enhancers | HUES64 Cell Line | embryonic stem cell |
| 40 | chr3:112066800-112068600 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
| 41 | chr3:112066800-112068600 | Weak transcription | Brain Anterior Caudate | brain |
| 42 | chr3:112066800-112072800 | Weak transcription | Colon Smooth Muscle | Colon |
| 43 | chr3:112066800-112076800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 44 | chr3:112066800-112076800 | Weak transcription | Ovary | ovary |
| 45 | chr3:112066800-112077000 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
| 46 | chr3:112067000-112068600 | Weak transcription | Fetal Kidney | kidney |
| 47 | chr3:112067000-112079400 | Weak transcription | Rectal Smooth Muscle | rectum |
| 48 | chr3:112067200-112068600 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
| 49 | chr3:112067200-112068600 | Weak transcription | Thymus | Thymus |
| 50 | chr3:112067200-112069200 | Strong transcription | Adipose Nuclei | Adipose |
